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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctagttgcttgaagaaattttcttccaaatcaccaagtgttttggcatcagtatgggtggcattgatgattgatctttggctgttctgtttgttatcagGCTTTGATATTTGGAAATGTCTGAAGTGAGAAACAAAGTGGATTTCATCCAGTTGCTTGGACCTGACATGTCAATCAAGATTCTCACCCATTTGGATGAC

Basic information

species Glycine max
transcript GLYMA16G32240.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33387300|gb|CA850507.1|CA850507
EST:     CCACCTCTCTCATATCTTCAGATCCATCACTCTCTTTGCAGNNNNNNNNG                         GCTTTGATATTTGGAAATGTCTGAAGTGAGAAACAAAGTGGATTTCATCCA
genomic: CCACCTCTCTCATATCTTCAGATCCATCACTCTCTTTGCAGAAAAAAAAGgttacccctt ... ttgttatcagGCTTTGATATTTGGAAATGTCTGAAGTGAGAAACAAAGTGGATTTCATCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatcagtatgggtggcattgatgattgatctttggctgttctgtttgttatcagGCTTTGATATTTGGAAATGTCTGAAGTGAGAAACAAAGTGGATTTCATCCAGTTGCTTGGACCTGACATGTCAATCAAGATTCTCACCCATTTGGATGAC
                       gattgat  putative branch site (score: 4)
                                       ttctgttt  putative PPT
                                            tttgttat  TA-rich tract