1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctttgttaagttgaagttctttggccaaactacttgctagtatgttggtatagagatttcgtacagatttattgatttaatttttgtttcatttttgaagCTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCAAGCATGGAGACTCGTCACTTGCATTTGGCTGCACGCTGGAGTTGTTCAT
species | Glycine max |
transcript | GLYMA16G32150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTTTCAACCCCTTAGGGAGAATCCGTTATTTGGTCCCTCTTCATCCAC CTTAACAAAGATGGGAGCACTTEST: gi|192294215|gb|FG986304.1|FG986304
genomic: TCCTTTCAGCCCCTTAGGGAGAATCCGTTATTTGGTCCCTCTTCGTCCACgtaagagctc ... atttttgaagCTTAACAAAGATGGGAGCACTT
EST: TCCTTTCAGCCCCTTAGGGAGAATCCGTTATTTGGTCCCTCTTCGTCCAC CTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA
genomic: TCCTTTCAGCCCCTTAGGGAGAATCCGTTATTTGGTCCCTCTTCGTCCACgtaagagctc ... atttttgaagCTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA
tggtatagagatttcgtacagatttattgatttaatttttgtttcatttttgaagCTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCAAGCATGGAGACTCGTCACTTGCATTTGGCTGCACGCTGGAGTTGTTCAT
tttttgtttcattttt CT-rich tract
tacagatttattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgttaagttgaagttctttggccaaactacttgctagtatgttggtatagagatttcgtacagatttattgatttaatttttgtttcatttttgaagCTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCAAGCATGGAGACTCGTCACTTGCATTTGGCTGCACGCTGGAGTTGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - ccaaact
- - - - - - - - - - - - - - - - cttgcta
- - - - - - - - - - - - - - - - - - - - - -gttggta