Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9258663|gb|BE346810.1|BE346810EST: TTTTCAAACACAATAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTAC GGATTCAGGAAAGTTGTGCCTGATCGGTGGGAGTTCTCGAACGATTATTTC
genomic: TTTTCAAACACAATAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTACgtaattattt ... tgatttgcagGGATTCAGGAAAGTTGTGCCTGATCGGTGGGAGTTCTCGAACGATTATTTC
EST:
gi|20075388|gb|BQ094171.1|BQ094171EST: TTTTCAAACACAATAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTAC GGATTCAGGAAAGTTGTGCCTGATCGGTGGGAGTTCTCGAACGATTATTTC
genomic: TTTTCAAACACAATAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTACgtaattattt ... tgatttgcagGGATTCAGGAAAGTTGTGCCTGATCGGTGGGAGTTCTCGAACGATTATTTC
EST:
gi|10844748|gb|BF067962.1|BF067962EST: TTTTCAAACACAATAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTAC GGATTCAAGAAAGTTGTGCCTGATCTGTGG
genomic: TTTTCAAACACAATAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTACgtaattattt ... tgatttgcagGGATTCAGGAAAGTTGTGCCTGATCGGTGG
EST:
gi|27424584|gb|CA936104.1|CA936104EST: TTTTCAAACACAATAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTAC GGATTCAGGAAAGTTGTGCCTGATCGGTGGGAGTTCTCGAACGATTATTTC
genomic: TTTTCAAACACAATAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTACgtaattattt ... tgatttgcagGGATTCAGGAAAGTTGTGCCTGATCGGTGGGAGTTCTCGAACGATTATTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgatgattttgaattttatttctaaaatttgtttataattttgcttgatttgcagGGATTCAGGAAAGTTGTGCCTGATCGGTGGGAGTTCTCGAACGATTATTTCCGCCGAGGCGAGAAGCGGCTTCTTTGCGAAATTCAGCGGCGGAAGATCT
ttttgctt CT-rich tract
attttgaattttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattatttcaattcaactctttgttttgtttttttttttttttttttgcttaggtttcgatgattttgaattttatttctaaaatttgtttataattttgcttgatttgcagGGATTCAGGAAAGTTGTGCCTGATCGGTGGGAGTTCTCGAACGATTATTTCCGCCGAGGCGAGAAGCGGCTTCTTTGCGAAATTCAGCGGCGGAAGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA