1 5' 3' | 2 5' 3' | 3 5' 3' |
...cattagatcctactattacaagttgttatcttttatgttaacaatatttttgtaaaactgtgagcagtaaatttatgatatgtttgtttgaatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAATGCTGAGTGATAGAGATGGGAAAGAGGACATGGACAGGCTTAGTGACTT
species | Glycine max |
transcript | GLYMA16G31980.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAAEST: gi|209701623|gb|BW667364.1|BW667364
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
EST: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAAEST: gi|209719584|gb|BW672065.1|BW672065
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
EST: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAAEST: gi|208304394|gb|GE106575.1|GE106575
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
EST: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAEST: gi|213605792|gb|DB968561.1|DB968561
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAA
EST: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAAEST: gi|120529845|gb|EH257979.1|EH257979
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
EST: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
atttttgtaaaactgtgagcagtaaatttatgatatgtttgtttgaatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAATGCTGAGTGATAGAGATGGGAAAGAGGACATGGACAGGCTTAGTGACTT
tttctt CT-rich tract
taaatttatgatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattagatcctactattacaagttgttatcttttatgttaacaatatttttgtaaaactgtgagcagtaaatttatgatatgtttgtttgaatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAATGCTGAGTGATAGAGATGGGAAAGAGGACATGGACAGGCTTAGTGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA