1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttgacctgagttcagatgttgccaacggaacagtaccctctcagatcgggaatctctctaagcttcgatatcttgacttgagccacaattattttgaagGTATGGCAATTCCTTCTTTCCTTTGTGCAATGACCTCCTTGACTCACCTCGACCTCTCTCTTACTGGATTCATGGGGAAGATTCCATCTCAGATTGGGAA
species | Glycine max |
transcript | GLYMA16G30320.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atcgggaatctctctaagcttcgatatcttgacttgagccacaattattttgaagGTATGGCAATTCCTTCTTTCCTTTGTGCAATGACCTCCTTGACTCACCTCGACCTCTCTCTTACTGGATTCATGGGGAAGATTCCATCTCAGATTGGGAA
tcttgac putative branch site (score: 3)
ttatttt putative PPT
acaattattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgacctgagttcagatgttgccaacggaacagtaccctctcagatcgggaatctctctaagcttcgatatcttgacttgagccacaattattttgaagGTATGGCAATTCCTTCTTTCCTTTGTGCAATGACCTCCTTGACTCACCTCGACCTCTCTCTTACTGGATTCATGGGGAAGATTCCATCTCAGATTGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- tgacctg
- - - - - - - - -tgttgcc
- - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccaca