Sequence
atgc intronic sequence ATGC exonic sequence...atgtagcttactctgcagttgggaagggtgtacttgaacaagagtgtaattgcagcgcacagatttattaatagtcttgtagatctgttggctttttcagGATGGGCAAGTGCAAGGGTTGTGGAAAGTTAGGAAGAATGAGGCCAAGTCATATGAGCGCGTATGAATTTTCTCTGATGCTGGCTCCTGTTGTTTCTGTT
Basic information
species | Glycine max |
transcript | GLYMA16G29840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298184145|gb|HO029358.1|HO029358EST: GTCTCTGATAAGGTTCAGCCCTTCCTTTGCTCTCTATGCCATTCCCGCAG GATGGGCAAGTGCAAGGGTTGTGGAAAGTTAGGAAGAATGAGGCCAAGTCA
genomic: GTCTCTGATAAGGTTCAGCCCTTCCTTTGCTCTCTATGCCATTCCCGCAGgtttgattct ... gctttttcagGATGGGCAAGTGCAAGGGTTGTGGAAAGTTAGGAAGAATGAGGCCAAGTCA
EST:
gi|193324417|gb|FK289631.1|FK289631EST: GTCTCTGATAAGGTTCAGCCCTTCCTTTGCTCTCTATGCCATTCCCGCAG GATGGGCAAGTGCAAGGGTTGTGGAAAGTTAGGAAGAATGAGGCCAAGTCA
genomic: GTCTCTGATAAGGTTCAGCCCTTCCTTTGCTCTCTATGCCATTCCCGCAGgtttgattct ... gctttttcagGATGGGCAAGTGCAAGGGTTGTGGAAAGTTAGGAAGAATGAGGCCAAGTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaattgcagcgcacagatttattaatagtcttgtagatctgttggctttttcagGATGGGCAAGTGCAAGGGTTGTGGAAAGTTAGGAAGAATGAGGCCAAGTCATATGAGCGCGTATGAATTTTCTCTGATGCTGGCTCCTGTTGTTTCTGTT
tattaat putative branch site (score: 2)
ctttttc putative PPT
atttattaatagtctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtagcttactctgcagttgggaagggtgtacttgaacaagagtgtaattgcagcgcacagatttattaatagtcttgtagatctgttggctttttcagGATGGGCAAGTGCAAGGGTTGTGGAAAGTTAGGAAGAATGAGGCCAAGTCATATGAGCGCGTATGAATTTTCTCTGATGCTGGCTCCTGTTGTTTCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - ctctgca
- - - - - - - - - - -ggaaggg
- - - - - - - - - - - - - - - - cttgaac
- - - - - - - - - - - - - - - - - - - - - - - - -ttgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg