Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataatcacttcaattcccatttacaaacacactttattcaatttcattacattaacaaaaaaaactcgaacttttcccatacataaaacccctacattttacatcaatatccattttttttttctacagAAAAAGCCATCAGAAGAAAATGGTGTGCCATGTAACAGCAGACAATCTGTCATCAGACTTGTGGGCATGGCGAAAATATGGGCAAAAACCCATCAAAGGC

Basic information

species Glycine max
transcript GLYMA16G29560.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29560.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G52830.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaataatcacttcaattcccatttacaaacacactttattcaatttcattacattaacaaaaaaaactcgaacttttcccatacataaaacccctacattttacatcaatatccattttttttttctacagAAAAAGCCATCAGAAGAAAATGGTGTGCCATGTAACAGCAGACAATCTGTCATCAGACTTGTGGGCATGGCGAAAATATGGGCAAAAACCCATCAAAGGC
                                                       |   || |   ||||  |||   || | ||  | |||         ||||  |   | |    | || ||   |  ||||| |  || || || | ||   | || ||||||||   ||| ||||| || || || |||||||| ||||| ||||| || ||||||||||||||||||
----------------------------------------------------gtttgttcatatcgaact-aaacacatctcttagttcaaagtttctttctttaattatcttttttgtcttgttgcttgtagAAAGAATCAGCAAAAAAGAACCATATGTCATGTAACGCAAGAGAATCTTTCTTCTGATTTGTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccatacataaaacccctacattttacatcaatatccattttttttttctacagAAAAAGCCATCAGAAGAAAATGGTGTGCCATGTAACAGCAGACAATCTGTCATCAGACTTGTGGGCATGGCGAAAATATGGGCAAAAACCCATCAAAGGC
                                 tatccatttttttttt  CT-rich tract
                     attttacatcaatatc  TA-rich tract