Sequence
atgc intronic sequence ATGC exonic sequence...aacattttttaaaaccttgatgttgtgttcccttgatgacattttgtacattttgtgtggaactaacttggacatttgacacttcgtgtattgcagaaagAATGAATTAAGGATGCTGCAAAAGGGTTGCGTTTG
Basic information
species | Glycine max |
transcript | GLYMA16G29010.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192303054|gb|FG994172.1|FG994172EST: T-CTGAAAGCTCA-TTTATGAAGCAGT-CTC-ATTGCAAA-GATCCATTG AAGATGAATTATG-ATGCTGCAAAAGG-TTGCGTT
genomic: TTCTGAAAGCTCAATTTATGAAGCAGTTCTCCATTGCAAAAGATCCATTGgtatgttcaa ... ttgcagaaagAA--TGAATTAAGGATGCTGCAAAAGGGTTGCGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacattttttaaaaccttgatgttgtgttcccttgatgacattttgtacattttgtgtggaactaacttggacatttgacacttcgtgtattgcagaaagAATGAATTAAGGATGCTGCAAAAGGGTTGCGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - gatgttg
- - - - - - - - - - - - -tgttccc
- - - - - - - - - - - - - - - - -tgatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacact