1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttcgtgttttttgcattttttgagtttttaagggataattcttgtgaccctttttgtgttttggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACTCTGTTGGAATGTGGTCTAAGCCAACGTTTAGGCGCAAGACGAAGATAG
species | Glycine max |
transcript | GLYMA16G28980.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATCTGCCCCTTCTGAAGTCATCCCCATGTCACCCGAAGATGATCCAAAA ATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACEST: gi|213600130|gb|DB970234.1|DB970234
genomic: AATCTGCCCCTTCTGAAGTCATCCCCATGTCACCCGAAGATGATCCAAAAgttcgtgttt ... tggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
EST: AATCTGCCCCTTCTGAAGTCATCCCCATGTCACCCGAAGATGATCCAAAA ATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACEST: gi|193607503|gb|FK558320.1|FK558320
genomic: AATCTGCCCCTTCTGAAGTCATCCCCATGTCACCCGAAGATGATCCAAAAgttcgtgttt ... tggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
EST: AATCTGCCCCTTCTGAAGTCATCCCCATGTCACCCGAAGATGATCCAAAA ATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACEST: gi|193682386|gb|FK624604.1|FK624604
genomic: AATCTGCCCCTTCTGAAGTCATCCCCATGTCACCCGAAGATGATCCAAAAgttcgtgttt ... tggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
EST: AATCTGCCCCTTCTGAAGTCATCCCCATGTCACCCGAAGATGATCCAAAA ATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
genomic: AATCTGCCCCTTCTGAAGTCATCCCCATGTCACCCGAAGATGATCCAAAAgttcgtgttt ... tggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
tttttgagtttttaagggataattcttgtgaccctttttgtgttttggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACTCTGTTGGAATGTGGTCTAAGCCAACGTTTAGGCGCAAGACGAAGATAG
ccctttttgtgtttt CT-rich tract
agtttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgttttttgcattttttgagtttttaagggataattcttgtgaccctttttgtgttttggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACTCTGTTGGAATGTGGTCTAAGCCAACGTTTAGGCGCAAGACGAAGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA