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...tttacctagcaagtagttaatgtcactggttgatataaaaagtgggttttagacgttcagttctctccttgtagacattgaaaagttttaattggtgcagGTATTTGAAGAGTGGACCTGGGAATCTTGAAAAAAATATGGAGAGGAGGTTTAGTTATGCTTTAAGCAGAGAAGACATTGAGAATGCAGTACTTGGAGGA
species | Glycine max |
transcript | GLYMA16G28940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGATTGGCATGCCGAGCTCTTCCTAGACCTTACTGATCTATACATAAG GTATTTGAAGAGTGGEST: gi|20812026|gb|BQ296504.1|BQ296504
genomic: CCAGATTGGCATGCCGAGCTCTTCCTAGACCTTACTGATCTATACATAAGgtgtcatacc ... attggtgcagGTATTTGAAGAGTGG
EST: CCAGATTGGCATGCCGAGCTCTTCCTAGACCTTACTGATCTATACATAAG GTATTTGAAGAGTGGACCTGGGAATCTTGNNNNNNNTATGGAGAGGAGGTTEST: gi|209710540|gb|BW662076.1|BW662076
genomic: CCAGATTGGCATGCCGAGCTCTTCCTAGACCTTACTGATCTATACATAAGgtgtcatacc ... attggtgcagGTATTTGAAGAGTGGACCTGGGAATCTTGAAAAAAATATGGAGAGGAGGTT
EST: CCAGATTGGCATGCCGAGCTCTTCCTAGACCTTACTGATCTATACATAAG GTATTTGAAGAGTGGACCTGGGAATCTTGNNNNNNNTATGGAGAGGAGGTT
genomic: CCAGATTGGCATGCCGAGCTCTTCCTAGACCTTACTGATCTATACATAAGgtgtcatacc ... attggtgcagGTATTTGAAGAGTGGACCTGGGAATCTTGAAAAAAATATGGAGAGGAGGTT
gttttagacgttcagttctctccttgtagacattgaaaagttttaattggtgcagGTATTTGAAGAGTGGACCTGGGAATCTTGAAAAAAATATGGAGAGGAGGTTTAGTTATGCTTTAAGCAGAGAAGACATTGAGAATGCAGTACTTGGAGGA
ttttaat putative branch site (score: 3)
attgaaaagttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacctagcaagtagttaatgtcactggttgatataaaaagtgggttttagacgttcagttctctccttgtagacattgaaaagttttaattggtgcagGTATTTGAAGAGTGGACCTGGGAATCTTGAAAAAAATATGGAGAGGAGGTTTAGTTATGCTTTAAGCAGAGAAGACATTGAGAATGCAGTACTTGGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - gcaagta
- - - - - - - - - - tgtcact
- - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - -gggtttt