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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccctccccactccatcatttattatactttcttcttcttctttattattgttgattaatataacatacacccacatatttcatatgggtacttgttaatttgggtgtggattgttagtttgttacttgttttgttccgttcagGTGATTGTTTGATTGAGCCTTGAAGAAATGGACCACAGCGCTGATGCACATCGCACGGACTTGATGACCATAACGCGGTTCGTGCTGAACGAGCAATCCA

Basic information

species Glycine max
transcript GLYMA16G28310.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10844624|gb|BF067794.1|BF067794
EST:     CCCCCATCCACTG                         GTGATTGTTTGATTGAGCCTTGAAGAAATGGACCACAGCGCTGATGCACAT
genomic: CCCCCATCCACTGgtccctcccc ... ttccgttcagGTGATTGTTTGATTGAGCCTTGAAGAAATGGACCACAGCGCTGATGCACAT
EST: gi|14125499|gb|BG789937.1|BG789937
EST:     ATCTCTTTCTCCTTCTCCCTAAACCTCGAACTCAGCACCCCCATCCACTG                         GTGATTGTTTGATTGAGCCTTGAAGAAATGGACCACAGCGCTGATGCACAT
genomic: ATCTCTTTCTCCTTCTCCCTAAACCTCGAACTCAGCACCCCCATCCACTGgtccctcccc ... ttccgttcagGTGATTGTTTGATTGAGCCTTGAAGAAATGGACCACAGCGCTGATGCACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttgttaatttgggtgtggattgttagtttgttacttgttttgttccgttcagGTGATTGTTTGATTGAGCCTTGAAGAAATGGACCACAGCGCTGATGCACATCGCACGGACTTGATGACCATAACGCGGTTCGTGCTGAACGAGCAATCCA
    tgttaat  putative branch site (score: 3)
                                        ttttgttcc  putative PPT
      ttaattt  TA-rich tract