Sequence
atgc intronic sequence ATGC exonic sequencegttagcattcctgtttttctattaacataatctcttgatagatttggctaacactgcaactgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATACTGATGATTTAGAAAGTGAGTTTGATATTGGGAGTGTGTTCTCTGCTCGCCTTAACTATGG
Basic information
species | Glycine max |
transcript | GLYMA16G28080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G28080.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------------------------gttagcattcc-tgtttttctatt---aacataatct--cttgata--gatttggctaacactgcaactga--tttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATACTGATGATTTAGAAAGTGAGTTTGATATTGGGAGTGTGTTCTCTGCTCGCCTTAACTATGG
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gtaaagggtttctataatttcttggttgactctgtctcttttctattactctgtgttttttcatcccaaactccactctacttggtgatgattccactaatagcacacttaaaacatcagGTAGTCCCAGAGTTGAAGGGGATGAAGAGGAAGATGACATTGATGATTTGGAGAATGAGTTTGATTTCAGAAGCAATTACAGTAGGGATCCTCATCAGGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213601287|gb|DB964724.1|DB964724EST: CACTAAATTTTAATCAATAGTAGAGAGCATATTAGAGATTGAATG GTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATACTGATGATTTAG
genomic: CACTAAATTTTAATCAATAGTAGAGAGCATATTAGAGATTGAATGgttagcattc ... ctgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATACTGATGATTTAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttctattaacataatctcttgatagatttggctaacactgcaactgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATACTGATGATTTAGAAAGTGAGTTTGATATTGGGAGTGTGTTCTCTGCTCGCCTTAACTATGG
tattaacataatct TA-rich tract