Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggcctcttggtgaggtgactgatccaatctatccaggtggcagctttgacccattgggtcttgctgatgacccagaggcttttgctgagCTGAAGGTGAAGGAGCTCAAGAATGGTAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCAATTGTGACAGGAAAGGGACCCTTAGAAAACC

Basic information

species Glycine max
transcript GLYMA16G27990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27990.1 (Glycine max), 3'ss of exon 1
lower sequence: EDP00188 (Chlamydomonas reinhardtii), 3'ss of exon 5
---------------------gtgggcctcttggtgaggtgactgatccaatctatccaggtg-gca-gctttgacccattgggt-------cttgctgatgacccagaggcttttgctgagCTGA-AGGTGAAGGAGCTCAAGAATGGTAGGTT----GGCCATGTTCTCCATGTTTGGATTCTT--TGTTCAGGCAATTGTGACAGGAAAGGGACCCTTAGAAAACC
                     || ||     || ||| | | |||      |  |  | | || |||   |||    ||| |  |       |||| || | |||   | ||||| |     |  | |||  |||  || |      ||   |||    | ||   |   ||  | |  |   |    || |   ||     |||  |  ||||    |    |   ||
gtgagtgcttgcggcaaaagggttggtgatgtg-tgatggggctgcgtatgtacacgctgctgtgcataatttaggtcatggaatgatatagcttgttgctaacctgaatgctttcgtaaccccaacagGACAAGCTGCACCCCGGCGGCCAGTTCTTCGACCCCCTGGGCCTGGCTGAGGACCCCGATGCTTTCGCTGAGCTGAAGGTGAAGGAGATCAAGAACGGCC

upper sequence: GLYMA16G27990.1 (Glycine max), 3'ss of exon 1
lower sequence: EDP01724 (Chlamydomonas reinhardtii), 3'ss of exon 4
---gtgggcctcttggtgaggtgactg-atccaatctatccaggtggcagctttgacccattgggtcttgctgatg-acccagaggcttttgctgagCTGAAGGTGAAGGAGCTCAAGAAT---GGTAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCAATTGTGAC-------AGGAAAGGGACCCTTAGAAAACC----
     ||||  ||  || | |  |||| ||||  | | |||     |  ||    |     ||   | |||||| | |       ||   ||||           | |||| | |  | |    ||   || |  |     | |   |  |||  |       | | ||  |  |         |||  | |||     ||||   |    
gccacgggctgctgcgtaaag--actgtatcc--tttgtcc-----gtggccgaaaggtgctgtaccctgctgacgcatttgctcgccgctgctcccacatgcacgcagGACCCCCTGTACCCCGGCGAGTCGTTCG-ACCCCCTGGGCCTGG-CTGACGACCCCGACACCTTCGCTGAGCTGAAGGTGAAGGAGATCAAGAACGGCCGCC

upper sequence: GLYMA16G27990.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S169_127V6.1 (Physcomitrella patens), 3'ss of exon 1
gtgggcctcttggtgaggtgactgatccaatctatccaggtggcagctttgacccattgggtcttgctgatgacccagaggcttttgctgagCTGAAGGTGAAGGAGCTCAAGAATGGTAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCAATTGTGACAGGAAAGGGACCCTTAGAAAACC------------------------------------------------------------------
                                                                 ||  |||| |  ||   | | |||||| |||||||||||||| ||||||| ||| | ||| | ||||  |||| ||| ||||||||||||||||| || || || |||||| ||||||| || ||||                                                                  
-----------------------------------------------------------------gccaatgatctcgaca-tctcgctgagttgaaggtgaaggagatcaagaacggttgtttgacaatgtattccacgttcggattctttgttcagGCTATCGTCACTGGAAAGAGACCCTTGGAGAACCTGAGCGACTATCTTGCAGATCCCGGTACCAACAACGCCTGGGCATACACCACCAACTTCACCCCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtggcagctttgacccattgggtcttgctgatgacccagaggcttttgctgagCTGAAGGTGAAGGAGCTCAAGAATGGTAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCAATTGTGACAGGAAAGGGACCCTTAGAAAACC
                           tgctgat  putative branch site (score: 3)
                                            cttttgct  putative PPT