Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttccttatttgaccaaacagttttggcaagtatactattatctattcattaaaagtgctactcgaactttcttcctgatatttttgcttataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAACAGTTGAGCTGCCTGATGCTCAGGATGTTAAGCTCAAACTGGAGCCAGAA

Basic information

species Glycine max
transcript GLYMA16G27570.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298188987|gb|HO035712.1|HO035712
EST:     GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAG                         CCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
genomic: GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAGgtgcgcatgc ... tataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
EST: gi|209703751|gb|BW665024.1|BW665024
EST:     GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAG                         CCGCCATCCTTCTGTC-AATGGGCTCAGACGTCTGATGTACTCTACTTAAC
genomic: GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAGgtgcgcatgc ... tataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
EST: gi|192327386|gb|FK018148.1|FK018148
EST:     GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAG                         CCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
genomic: GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAGgtgcgcatgc ... tataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
EST: gi|192323243|gb|FK017409.1|FK017409
EST:     GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAG                         CCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
genomic: GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAGgtgcgcatgc ... tataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
EST: gi|213587097|gb|DB965885.1|DB965885
EST:     GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAG                         CCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
genomic: GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAGgtgcgcatgc ... tataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
EST: gi|192297482|gb|FG989517.1|FG989517
EST:     GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAG                         CCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
genomic: GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAGgtgcgcatgc ... tataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
EST: gi|207757019|gb|GD726757.1|GD726757
EST:     GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAG                         CCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
genomic: GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAGgtgcgcatgc ... tataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
EST: gi|213614007|gb|DB960972.1|DB960972
EST:     GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAG                         CCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC
genomic: GAAAACCAACCAGACCGATTACTCTTGAGGAAACAAAAATCTAAGATGAGgtgcgcatgc ... tataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcattaaaagtgctactcgaactttcttcctgatatttttgcttataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAACAGTTGAGCTGCCTGATGCTCAGGATGTTAAGCTCAAACTGGAGCCAGAA
                             tcctgat  putative branch site (score: 3)
                                     tttttgctt  CT-rich tract
                                  atatttttgcttataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttccttatttgaccaaacagttttggcaagtatactattatctattcattaaaagtgctactcgaactttcttcctgatatttttgcttataatacagCCGCCATCCTTCTGTCAAATGGGCTCAGACGTCTGATGTACTCTACTTAACAGTTGAGCTGCCTGATGCTCAGGATGTTAAGCTCAAACTGGAGCCAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA