1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttcctcttgaagtacatgcagttttgtctattatattatatattaggtcatggttcatagtttagactatgcaaatagctaatttgatcaattttgtagCTGAAAGAAGCTCATTATAGAAGACTCTGCAGCTCAAAACCCATATTGACAGTGAATGGACAATTTCCAGGGCCAACTGTTAGAGCCTACTATGGTGAAA
species | Glycine max |
transcript | GLYMA16G27480.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCCATAGTTGGAACCAATTCTCATGGATTGAAGGAATACCATTTTGTT CTGAAAGAAGCTCATTATAGAAGACTCTGCAGCTCAAAACCCATATTGACAEST: gi|5342419|gb|AI794703.1|AI794703
genomic: TTTCCATAGTTGGAACCAATTCCCATGGATTGAAGGAATACCATTTTGTTgtgagttctg ... aattttgtagCTGAAAGAAGCTCATTATAGAAGACTCTGCAGCTCAAAACCCATATTGACA
EST: TTTCCATAGTTGGAACCAATTCCCATGGATTGAAGGAATACCATTTTGTT CTGAAAGAAGCTCATTATAGAAGACTCTGCAGCTCAAAACCCATATTGACA
genomic: TTTCCATAGTTGGAACCAATTCCCATGGATTGAAGGAATACCATTTTGTTgtgagttctg ... aattttgtagCTGAAAGAAGCTCATTATAGAAGACTCTGCAGCTCAAAACCCATATTGACA
aggtcatggttcatagtttagactatgcaaatagctaatttgatcaattttgtagCTGAAAGAAGCTCATTATAGAAGACTCTGCAGCTCAAAACCCATATTGACAGTGAATGGACAATTTCCAGGGCCAACTGTTAGAGCCTACTATGGTGAAA
taatttgatcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctcttgaagtacatgcagttttgtctattatattatatattaggtcatggttcatagtttagactatgcaaatagctaatttgatcaattttgtagCTGAAAGAAGCTCATTATAGAAGACTCTGCAGCTCAAAACCCATATTGACAGTGAATGGACAATTTCCAGGGCCAACTGTTAGAGCCTACTATGGTGAAA
- -cctcttg
- - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - -gtcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgca