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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacctaacaatttctagtggtgatgaggtttgtagtatcatttatcaaaagcccaggttagcaatgcaaaacagtgaaagtgtctgcttgctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTGGTGACTGGCACACCGGGGACAGGAAAGACAACTGTGTGCACTGCTCTAG

Basic information

species Glycine max
transcript GLYMA16G27430.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151413178|gb|EV282986.1|EV282986
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|151408294|gb|EV278102.1|EV278102
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|298178466|gb|HO024201.1|HO024201
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|254347362|gb|GR853611.1|GR853611
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|192318019|gb|FK009471.1|FK009471
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|192311583|gb|FK004838.1|FK004838
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|254331450|gb|GR845922.1|GR845922
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|151409650|gb|EV279458.1|EV279458
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|7686359|gb|AW757007.1|AW757007
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|192316022|gb|FK007125.1|FK007125
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGCGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|151401187|gb|EV271001.1|EV271001
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|192294148|gb|FG986237.1|FG986237
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GCTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|298193921|gb|HO040569.1|HO040569
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|254317987|gb|GR832155.1|GR832155
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|298183620|gb|HO028833.1|HO028833
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGCGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|298191749|gb|HO035831.1|HO035831
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|192317805|gb|FK009397.1|FK009397
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|192294475|gb|FG987404.1|FG987404
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|298196424|gb|HO041167.1|HO041167
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|58018064|gb|CX704806.1|CX704806
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCTTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|213619568|gb|DB963734.1|DB963734
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCC                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|192316021|gb|FK007124.1|FK007124
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGCGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|298193545|gb|HO034151.1|HO034151
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGTAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|254317988|gb|GR832156.1|GR832156
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAG-CTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|298173730|gb|HO017066.1|HO017066
EST:     GACTGAGGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACGTTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|298192839|gb|HO033273.1|HO033273
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|192295693|gb|FG990547.1|FG990547
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
EST: gi|298173803|gb|HO017139.1|HO017139
EST:     GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCT                         GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG
genomic: GACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTgtaagttcat ... gctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaacctaacaatttctagtggtgatgaggtttgtagtatcatttatcaaaagcccaggttagcaatgcaaaacagtgaaagtgtctgcttgctgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTGGTGACTGGCACACCGGGGACAGGAAAGACAACTGTGTGCACTGCTCTAG

- -cctaaca
- - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgca