1 5' 3' | 2 5' 3' | 3 5' 3' |
...acaattataaacattgagaagcatggaaaaaagttgaaatccttgaataatacccagttgccttaaactaatatacactttttgttgttcttgtgttcagATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG
species | Glycine max |
transcript | GLYMA16G27350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGTTGGGTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCG ATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAEST: gi|58014493|gb|CX701235.1|CX701235
genomic: TGGTGGTTGGGTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCGgtaatgttct ... ttgtgttcagATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCA
EST: TGGTGGTTGGGTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCG ATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAEST: gi|8402267|gb|BE057901.1|BE057901
genomic: TGGTGGTTGGGTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCGgtaatgttct ... ttgtgttcagATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCA
EST: TGGTGGTTGGGTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCG ATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAEST: gi|31465260|gb|CD407288.1|CD407288
genomic: TGGTGGTTGGGTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCGgtaatgttct ... ttgtgttcagATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCA
EST: GTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCG ATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCA
genomic: GTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCGgtaatgttct ... ttgtgttcagATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCA
aataatacccagttgccttaaactaatatacactttttgttgttcttgtgttcagATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG
aactaat putative branch site (score: 2)
ctttttgttgttctt putative PPT
ttaaactaatatacac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaattataaacattgagaagcatggaaaaaagttgaaatccttgaataatacccagttgccttaaactaatatacactttttgttgttcttgtgttcagATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - gcatgga
- - - - - - - - - - - - - - - - - - - - ccttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - cagttgc