1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attcatttgcattgacattcttccctttattttgtcgagtataagtgtcctcctatgtttattttgttatgaaaaccctgttcatgttgttatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGAATGCACATTGGTTTTATGAAGATAATTCCGTA
species | Glycine max |
transcript | GLYMA16G27200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATEST: gi|151410336|gb|EV280151.1|EV280151
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATEST: gi|193663793|gb|FK612421.1|FK612421
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATEST: gi|151409239|gb|EV279047.1|EV279047
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATEST: gi|151410478|gb|EV280293.1|EV280293
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCCCTGCAG CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATEST: gi|208251373|gb|GE049684.1|GE049684
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATEST: gi|208339211|gb|GE138917.1|GE138917
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
tgtcctcctatgtttattttgttatgaaaaccctgttcatgttgttatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGAATGCACATTGGTTTTATGAAGATAATTCCGTA
tatgtttattttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcatttgcattgacattcttccctttattttgtcgagtataagtgtcctcctatgtttattttgttatgaaaaccctgttcatgttgttatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGAATGCACATTGGTTTTATGAAGATAATTCCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA