Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccttttcacttttcaatctctaagacacccttttgtaaatacccatgatttgtttgcaaattttggtttcttattctgaaaattgtgaatttttgtatccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCTTTGATTAGAGCAATAATGTACATGGTGGCTCAGTGCTTGGGAGC

Basic information

species Glycine max
transcript GLYMA16G27140.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600789|gb|DB958409.1|DB958409
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|14009176|gb|BG725780.1|BG725780
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|4285566|gb|AI440922.1|AI440922
EST:     TGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: TGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|21677365|gb|BQ629716.1|BQ629716
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|5058119|gb|AI736595.1|AI736595
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|19935893|gb|BQ080631.1|BQ080631
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|193708830|gb|FK648568.1|FK648568
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|120533076|gb|EH261209.1|EH261209
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|193671934|gb|FK614608.1|FK614608
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|10237489|gb|BE806377.1|BE806377
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|120533343|gb|EH261476.1|EH261476
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|151410185|gb|EV280000.1|EV280000
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|4314068|gb|AI461187.1|AI461187
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAA                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCG-AAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|209699908|gb|BW652548.1|BW652548
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|213591714|gb|DB969814.1|DB969814
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|151394444|gb|EV264315.1|EV264315
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|192327569|gb|FK020630.1|FK020630
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|21602802|gb|BQ613133.1|BQ613133
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|209729770|gb|BW658575.1|BW658575
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: gi|23732139|gb|BU764225.1|BU764225
EST:     CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG                         GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcaaattttggtttcttattctgaaaattgtgaatttttgtatccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCTTTGATTAGAGCAATAATGTACATGGTGGCTCAGTGCTTGGGAGC
                          aaaattgtgaattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgccttttcacttttcaatctctaagacacccttttgtaaatacccatgatttgtttgcaaattttggtttcttattctgaaaattgtgaatttttgtatccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCTTTGATTAGAGCAATAATGTACATGGTGGCTCAGTGCTTGGGAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG