1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgccttttcacttttcaatctctaagacacccttttgtaaatacccatgatttgtttgcaaattttggtttcttattctgaaaattgtgaatttttgtatccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCTTTGATTAGAGCAATAATGTACATGGTGGCTCAGTGCTTGGGAGC
species | Glycine max |
transcript | GLYMA16G27130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|14258807|gb|BG881715.1|BG881715
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTTGCTCGCAAGGEST: gi|151410016|gb|EV279824.1|EV279824
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|298166196|gb|HO009167.1|HO009167
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTGCTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|17021836|gb|BM092870.1|BM092870
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|8401861|gb|BE057495.1|BE057495
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTCGCTCGCCAAGEST: gi|298188592|gb|HO035285.1|HO035285
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGC-AAG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACCGCACTGCTGGAATCTCAG GGGGTCGCATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|17022412|gb|BM093446.1|BM093446
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
tttgcaaattttggtttcttattctgaaaattgtgaatttttgtatccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCTTTGATTAGAGCAATAATGTACATGGTGGCTCAGTGCTTGGGAGC
aaaattgtgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccttttcacttttcaatctctaagacacccttttgtaaatacccatgatttgtttgcaaattttggtttcttattctgaaaattgtgaatttttgtatccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCTTTGATTAGAGCAATAATGTACATGGTGGCTCAGTGCTTGGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG