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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctcgtattgcatttctttcccctgcggtttctgaattcaagttttgtgcagttagttagttgatgaatgttgttgcgtttacattcttattcttcagCTTCGGTTGGTGCCACGGACTCTTCTTCTCTTGCGGTGAAG

Basic information

species Glycine max
transcript GLYMA16G27060.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15338067|gb|BI498723.1|BI498723
EST:     CCTTCGATTGCGCAGGCTCAATTGCTCAGTATCAGACGGCACCGTTCCGT                         CTTCGGTTGGTGCCACGGACTCTTCTTCTCTTGCGGTGAAG
genomic: CGTTCGATTGCGCAGGCTCAATTGCTCAGTATCAGACGGCACCGTTCCGTgtaagcctcg ... tattcttcagCTTCGGTTGGTGCCACGGACTCTTCTTCTCTTGCGGTGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgcagttagttagttgatgaatgttgttgcgtttacattcttattcttcagCTTCGGTTGGTGCCACGGACTCTTCTTCTCTTGCGGTGAAG
               agttgat  putative branch site (score: 5)
                                       cattcttattcttc  putative PPT
                                   tttacattcttatt  TA-rich tract