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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctctctctctgagtgagtgtgtttattcagttaggaatgttttgttgcttattggtgtttcattgtgattattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATGGGTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCAC

Basic information

species Glycine max
transcript GLYMA16G27020.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274722|gb|BF325057.1|BF325057
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCANTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcagttaggaatgttttgttgcttattggtgtttcattgtgattattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATGGGTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCAC
           aatgtttt  TA-rich tract