1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtgcttgtattaatatgttgctgaagaatgcgtttgtttggatagatttagaatgttggtggtggtcttgttttcaaatgttttgtttgatctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGATGCTGGGACAATTGTGAATGAACTTGAAGTTCAGCATCCTGCTGCCAA
species | Glycine max |
transcript | GLYMA16G26920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATG GAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|209710582|gb|BW661988.1|BW661988
genomic: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATGgtaacaatca ... tctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATG GAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|209715037|gb|BW650888.1|BW650888
genomic: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATGgtaacaatca ... tctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATG GAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|209706437|gb|BW670809.1|BW670809
genomic: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATGgtaacaatca ... tctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATG GAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|209713404|gb|BW679232.1|BW679232
genomic: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATGgtaacaatca ... tctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATG GAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|33389965|gb|CA853172.1|CA853172
genomic: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATGgtaacaatca ... tctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATG GAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|208269445|gb|GE066463.1|GE066463
genomic: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATGgtaacaatca ... tctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATG GGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
genomic: CGCTTGCAAACAACTTTCCACTATTACTCGAACTTCCCTCGGTCCCAATGgtaacaatca ... tctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
atttagaatgttggtggtggtcttgttttcaaatgttttgtttgatctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGATGCTGGGACAATTGTGAATGAACTTGAAGTTCAGCATCCTGCTGCCAA
atctgat putative branch site (score: 4)
ttttcaaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttgtattaatatgttgctgaagaatgcgtttgtttggatagatttagaatgttggtggtggtcttgttttcaaatgttttgtttgatctgattcagGAATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGATGCTGGGACAATTGTGAATGAACTTGAAGTTCAGCATCCTGCTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-tgcttgt
- - - - - - - -tgttgct
- - - - - - - - - - - - -gaatgcg
- - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg