Sequence
atgc intronic sequence ATGC exonic sequence...ggttttatattcggattccataagtaaaattttgcagttaaacctttctttcccaactaagtgattgttcattttgctctccatctgtattctttcacagGTATGTAGCAGTTGGGAACGAGCCATTTTTAAAATCCTACAATGGTTCATTCTTGAACATCACCCTCCCTGCATTACAGAACATTCAAAATGCCCTCAAT
Basic information
species | Glycine max |
transcript | GLYMA16G26860.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26860.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g07560.t01 (Vitis vinifera), 3'ss of exon 2
ggttttatattcggattccataagtaaaattttgcagttaaacctttctttcccaactaagtgattgttcattttgctctccatctg-----tattctttcacagGTATGTAGCAGTTGGGAACGAGCCATTTTTAAAATCCTACAATGGTTCATTCTTGAACATCACCCTCCCTGCATTACAGAACATTCAAAATGCCCTCAAT
| | || ||| || | || ||| ||| | | || || |||| | || | | || || | | | || ||||| ||||| | ||||||||| ||||| || | |||||||||||| ||||||||||| ||||| ||||||||| | |||||||| |||||||||||||||
---tgagtttttttattttgaaaatttaaattt--agtgggaatggtaactcttaattaagctgtccttattagcgtccttgatataatttttgtctttgcacagATATGTTGGAGTTGGGAATGAGCCTTTCCTCTCATCCTACAATGGGTCATTCTTGAATATCACTCTCCCTGCACTGCAGAACATCCAAAATGCCCTCAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctttcccaactaagtgattgttcattttgctctccatctgtattctttcacagGTATGTAGCAGTTGGGAACGAGCCATTTTTAAAATCCTACAATGGTTCATTCTTGAACATCACCCTCCCTGCATTACAGAACATTCAAAATGCCCTCAAT
tattctttc CT-rich tract
ttcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggttttatattcggattccataagtaaaattttgcagttaaacctttctttcccaactaagtgattgttcattttgctctccatctgtattctttcacagGTATGTAGCAGTTGGGAACGAGCCATTTTTAAAATCCTACAATGGTTCATTCTTGAACATCACCCTCCCTGCATTACAGAACATTCAAAATGCCCTCAAT
- - - - - - - - - - -aagtaaaa
- - - - - - - - - - - - - - - - tgcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcca