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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgttacacattagaaaaaaccatgcattcacaaatctcacattcaagttgttaccatatttacataactgatatttattgtattatcattgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG

Basic information

species Glycine max
transcript GLYMA16G26800.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193608999|gb|FK561583.1|FK561583
EST:     CAAAGGAGTTGCCTCTATCACCACTACAAACCCAA                         GTCACGGTTCCTGTATATTTTCAGGGAG
genomic: CAAAGGAGTTGCCTCTATCACCACTACAAACCCAAgtaaagagtc ... tgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG
EST: gi|193546085|gb|FK502290.1|FK502290
EST:     GGGGACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAA                         GTCACGGTTCCTGTATATTTTCAGGAAG
genomic: GGGGACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAAgtaaagagtc ... tgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG
EST: gi|193687631|gb|FK633476.1|FK633476
EST:     GGGGACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAA                         GTCACGGTTCCTGTATATTTTCAGGAAG
genomic: GGGGACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAAgtaaagagtc ... tgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG
EST: gi|193478660|gb|FK444131.1|FK444131
EST:     GGGGACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAA                         GTCACGGTTCCTGTATATTTTCAGGAAG
genomic: GGGGACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAAgtaaagagtc ... tgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG
EST: gi|193497441|gb|FK458293.1|FK458293
EST:     GGGACCTGTGATTTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAA                         GTCACGGTTCCTGTATATTTTCAGGAAG
genomic: GGGACCTGTGA-TTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAAgtaaagagtc ... tgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG
EST: gi|193350844|gb|FK318688.1|FK318688
EST:     ACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAA                         GTCACGGTTCCTGTATATTTTCAGGAAG
genomic: ACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAAgtaaagagtc ... tgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG
EST: gi|193582908|gb|FK542336.1|FK542336
EST:     AAAGGAGTTGCCTCTATCACCACTACAAACCCAA                         GTCACGGTTCCTGTATATTTTCAGGGAG
genomic: AAAGGAGTTGCCTCTATCACCACTACAAACCCAAgtaaagagtc ... tgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG
EST: gi|193384704|gb|FK351046.1|FK351046
EST:     GGGGACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAA                         GTCACGGTTCCTGTATATTTTCAGGAAAG
genomic: GGGGACCTGTGATTTCAAAGGAGTTGCCTCTATCACCACTACAAACCCAAgtaaagagtc ... tgtcacacagGTCACGGTTCCTGTATATTTTCAGGAA-G


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttgttaccatatttacataactgatatttattgtattatcattgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG
                     aactgat  putative branch site (score: 3)
           atatttacataactga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgttacacattagaaaaaaccatgcattcacaaatctcacattcaagttgttaccatatttacataactgatatttattgtattatcattgtcacacagGTCACGGTTCCTGTATATTTTCAGGAAG

ctgttac
- - - - - - -gaaaaaa
- - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - ctcacat
- - - - - - - - - - - - - - - - - - - - - - - - -tgttacc