1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgtaactataatatgtatgctaatatgcaatgatctatatgcagtaaatacaactttggttataaaattattcattatactcatgcaattttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTA
species | Glycine max |
transcript | GLYMA16G26630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|26057164|gb|CA800078.1|CA800078
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCCTGATAAATACACTG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|26057309|gb|CA800223.1|CA800223
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|26047926|gb|CA784566.1|CA784566
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|209697680|gb|BW655581.1|BW655581
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|213608142|gb|DB963044.1|DB963044
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|10710011|gb|BF009735.1|BF009735
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|21257114|gb|BQ454002.1|BQ454002
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|8826632|gb|BE210362.1|BE210362
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|21677422|gb|BQ629773.1|BQ629773
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: GGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|26047909|gb|CA784550.1|CA784550
genomic: GGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGCCACTTCAGCATGTEST: gi|192325208|gb|FK019109.1|FK019109
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|192300515|gb|FG991497.1|FG991497
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|37995899|gb|CF807488.1|CF807488
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|151410958|gb|EV280773.1|EV280773
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|15815678|gb|BI787953.1|BI787953
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|12688333|gb|BG154669.1|BG154669
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|14125481|gb|BG789919.1|BG789919
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|298197960|gb|HO039499.1|HO039499
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTCCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|10237640|gb|BE806528.1|BE806528
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|9204019|gb|BE330243.1|BE330243
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|7925629|gb|AW831655.1|AW831655
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTEST: gi|298174405|gb|HO014550.1|HO014550
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
gtaaatacaactttggttataaaattattcattatactcatgcaattttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTA
aactttggttataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaactataatatgtatgctaatatgcaatgatctatatgcagtaaatacaactttggttataaaattattcattatactcatgcaattttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGTACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTA
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