Sequence
atgc intronic sequence ATGC exonic sequencegtattgtctgaaccaattcacttcatcagcatgaaccctttgtattgtattgcaaagtatcattttgttctctttccagGGTGGATGGGAGGATGATGAGACTGTTACAGAAGCTGCTTGCCGTGAAGCGCTAGAGGAAGCAGGAGTCAAAGGGATTGTAAGG
Basic information
species | Glycine max |
transcript | GLYMA16G26440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26440.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G12880.1 (Arabidopsis thaliana), 3'ss of exon 2
-gtattgtctgaaccaattcact-tcatcagcatgaaccctttgtattgtat-tgcaaagtatcattttgttctctttccagGGTGGATGGGAGGATGATGAGACTGTTACAGAAGCTGCTTGCCGTGAAGCGCTAGAGGAAGCAGGAGTCAAAGGGATTGTAAGG
|| | |||| | | || || | | | | || |||| || || | | | | | || ||||| |||||||| ||||||||||||||| |||||||||| |||||||| | || ||||||||||| ||||| || | ||
gtctttttttgaattgaaaaatcatcctctgtactatcatttgtaattgctcatgttaatttgttgtgtatattattatcagGGAGGATGGGAAGATGATGAGACTGTTCTTGAAGCTGCTTCTCGTGAAGCCATTGAAGAAGCAGGAGTTAAAGGAATACTTAGA
upper sequence: GLYMA16G26440.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0068g00870.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------gtatt--gtctgaaccaattcacttca-tcagcatgaaccctttgtattgtattgcaaagtatcattttgttctctttccagGGTGGATGGGAGGATGATGAGACTGTTACAGAAGCTGCTTGCCGTGAAGCGCTAGAGGAAGCAGGAGTCAAAGGGATTGTAAGG
||| | || | | ||| || || || || | || || ||| |||| | |||| ||| |||||||||||||||||||||||||| ||| |||||| || ||||||||||| |||||||||||||||| ||||| ||| | |
gtacaattttcctcctctcttcctcccatattggtaattggtatagaaggattgttaccactcttaattaaaattctgag--gttttgatttttatc-ctatgtttgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCCTTAGAGGAAGCAGGAGTGAAAGGAATTCTTAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcagcatgaaccctttgtattgtattgcaaagtatcattttgttctctttccagGGTGGATGGGAGGATGATGAGACTGTTACAGAAGCTGCTTGCCGTGAAGCGCTAGAGGAAGCAGGAGTCAAAGGGATTGTAAGG
tcattttgttctcttt CT-rich tract
tattgtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattgtctgaaccaattcacttcatcagcatgaaccctttgtattgtattgcaaagtatcattttgttctctttccagGGTGGATGGGAGGATGATGAGACTGTTACAGAAGCTGCTTGCCGTGAAGCGCTAGAGGAAGCAGGAGTCAAAGGGATTGTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA