1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttagaggtggtgttgttctccttttggttttagttttgttctagggttttttcctgttgttttgactattttggtgtggtttggtggatggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAGGTTGCTGGGGAGATTCTATCGTTCTTCACTCGTAACAATTTTGCAGTGA
species | Glycine max |
transcript | GLYMA16G26340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAG ATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAGEST: gi|192302487|gb|FG994809.1|FG994809
genomic: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGgtgatcattc ... ggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAG
EST: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAG ATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAGEST: gi|7795663|gb|AW781060.1|AW781060
genomic: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGgtgatcattc ... ggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAG
EST: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAG ATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAGEST: gi|31309305|gb|CD394508.1|CD394508
genomic: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGgtgatcattc ... ggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAG
EST: CTCTCATCAAACGTTCGGTCAAATCCAAG ATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAGEST: gi|20811369|gb|BQ295847.1|BQ295847
genomic: CTCTCATCAAACGTTCTGTCAAATCCAAGgtgatcattc ... ggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAG
EST: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAG ATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAGEST: gi|151399988|gb|EV269859.1|EV269859
genomic: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGgtgatcattc ... ggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAG
EST: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAG ATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAGEST: gi|31561633|gb|CD487471.1|CD487471
genomic: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGgtgatcattc ... ggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAG
EST: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAG ATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAG
genomic: TCTCTGTGCCTGGACTCTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGgtgatcattc ... ggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAG
ggttttttcctgttgttttgactattttggtgtggtttggtggatggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAGGTTGCTGGGGAGATTCTATCGTTCTTCACTCGTAACAATTTTGCAGTGA
ttttgac putative branch site (score: 3)
actatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagaggtggtgttgttctccttttggttttagttttgttctagggttttttcctgttgttttgactattttggtgtggtttggtggatggggaaatagATTGTGCAGAAGACGTTTATAGGTGAAGGTGAAAAGAAGGCGCCGAATCAGGTTGCTGGGGAGATTCTATCGTTCTTCACTCGTAACAATTTTGCAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - ggtggtg
- - - - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgga