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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttaattgggttgaagcatgctttttctccagtaattgatttattattttttgttcaactaaagcaactctagtaattgatgtaacataattttgtctagGTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTGAGATTCCTGCAACTGTTACTGCTGTTAAGAACCCTACTTCTAAGATTGT

Basic information

species Glycine max
transcript GLYMA16G26330.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347750|gb|BI973345.1|BI973345
EST:     TGATGACCGCAGATCCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAG                         GTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG
genomic: TGATGACCGCAGATCCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAGgttacacttt ... ttttgtctagGTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG
EST: gi|57575295|gb|CX548270.1|CX548270
EST:     GCAGATCCGATCNTTCTTNCCATCCCCCTTTTCCTTTCAGAG                         G-TTTGNNTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCNT
genomic: GCAGATCCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAGgttacacttt ... ttttgtctagGTTTTG-CTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCT
EST: gi|9899922|gb|BE608890.1|BE608890
EST:     TGATGACCGCAGATCCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAG                         GTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG
genomic: TGATGACCGCAGATCCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAGgttacacttt ... ttttgtctagGTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG
EST: gi|192296919|gb|FG991930.1|FG991930
EST:     TGATGACCGCAGATCCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAG                         GTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG
genomic: TGATGACCGCAGATCCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAGgttacacttt ... ttttgtctagGTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG
EST: gi|5678032|gb|AI939162.1|AI939162
EST:     TGATGACCGCAGATCCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAG                         GTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG
genomic: TGATGACCGCAGATCCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAGgttacacttt ... ttttgtctagGTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG
EST: gi|22522565|gb|BU081376.1|BU081376
EST:     CCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAG                         GTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG
genomic: CCGATCCTTCCTCCCATCCCCTTTTTCCCTTCAGAGgttacacttt ... ttttgtctagGTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttgttcaactaaagcaactctagtaattgatgtaacataattttgtctagGTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTGAGATTCCTGCAACTGTTACTGCTGTTAAGAACCCTACTTCTAAGATTGT
                                             ttttgtct  CT-rich tract
                            taattgatgtaacata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttaattgggttgaagcatgctttttctccagtaattgatttattattttttgttcaactaaagcaactctagtaattgatgtaacataattttgtctagGTTTTGCTACTGAATCCCTGATCCACCCAATAGAAAACAGCATTATTCCTGAGATTCCTGCAACTGTTACTGCTGTTAAGAACCCTACTTCTAAGATTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - tgggttg
- - - - - - - -gcatgct
- - - - - - - - - - - - -tctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgta