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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctcacacttaataccctactaattcccttaatctatctatgattctttgatttcaatttcaattattcgatttttttttcatcctttcaatgagattgccgaattaatttgttcaattgaattctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGCCTCATGAAGGGTACCCTCCGCCGCCGCCGCCTCCGGGATATGGTGGGTA

Basic information

species Glycine max
transcript GLYMA16G26190.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166106|gb|HO009077.1|HO009077
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|209729159|gb|BW660059.1|BW660059
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|151405064|gb|EV274878.1|EV274878
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|254328344|gb|GR835309.1|GR835309
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|298175589|gb|HO018300.1|HO018300
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|209711587|gb|BW676832.1|BW676832
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|298178245|gb|HO023980.1|HO023980
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|254314226|gb|GR831855.1|GR831855
EST:     GCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: GCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|19935453|gb|BQ080447.1|BQ080447
EST:     ATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: ATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatcctttcaatgagattgccgaattaatttgttcaattgaattctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGCCTCATGAAGGGTACCCTCCGCCGCCGCCGCCTCCGGGATATGGTGGGTA
                         aattaat  putative branch site (score: 3)
                         aattaatttgttcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacctcacacttaataccctactaattcccttaatctatctatgattctttgatttcaatttcaattattcgatttttttttcatcctttcaatgagattgccgaattaatttgttcaattgaattctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGCCTCATGAAGGGTACCCTCCGCCGCCGCCGCCTCCGGGATATGGTGGGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG