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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattagatatctgaaactatgatatatatagatacactccctgtgcttctggggagaatagtgtcagattagaacatgactttgtttgattttgttttagGTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAAT

Basic information

species Glycine max
transcript GLYMA16G26160.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26160.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 3'ss of exon 1
aattagatatctgaaactatgatatatatagatacactccctgtgcttctggggagaatagt-gtcagattagaacatgactttgtttgattt-tgttttagGTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAAT------
  | ||  || |  |  |||||| | |        |   ||||||||       | |||| | || ||| |   |        |||||||||| ||||| ||||||||| |||||| | ||  |||| |||| ||| |||||||| ||||| ||||| ||||||||||||   || ||||| ||||| ||||||||      
tctaagggattttgacatatgatttttgagagggaaa--cctgtgctgtatcaaaaaatacttgtgagagtcacatgctcacatgtttgatttctgtttcagGTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTTTTGTGCTGGGGAAGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctggggagaatagtgtcagattagaacatgactttgtttgattttgttttagGTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAAT
                                      gtttgat  putative branch site (score: 5)
                                            ttttgtttt  CT-rich tract
                                       tttgattttgtttta  TA-rich tract