Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaaatcactttgttggcatattttagtgattttgaatggtttggtgggttttggtgtgatggtgatttatgcatgcacgttttgctcttatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCT

Basic information

species Glycine max
transcript GLYMA16G26130.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26130.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G54890.4 (Arabidopsis thaliana), 3'ss of exon 1
aaaaaatcactttgttggcatattttagtgattttgaatggtttggtgggttttggtgtgatggt---gatttatgcatgcacgttttgctct-tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCT
  |     || |  || | ||   |||  | || ||| |       |||   ||| |  ||  ||     ||| |  | |    ||  |  |   ||  | |||||||||||| || ||||| ||| | ||||| ||||| |||| ||| |||||||| | |||||||||||| ||||| ||||| |||||||| ||||| |||
--actggaacctcttttg-atgacttaagggttctgatttcaacattggaggttgtttagaaagtttcagtttttctaagt-tattgggtacaacattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCT

upper sequence: GLYMA16G26130.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0019g04140.t01 (Vitis vinifera), 3'ss of exon 1
-aaaaaatcactttgttggcatattttagtgattttgaatggtttggtgggttttggtgtgatggtgattt--atgcatgcacgttttgctcttatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCT
  || ||| |        |  | |  || | || ||  | |     || | |  || | |||||   ||||   || |||   ||  || |  | |||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| |  || || || ||||| || |||||||||||||| ||||| |||
gtaagaataatggatcaagtgtttgatatttatctttgaag---cagtagatcatg-tttgatgaaaattttggtggatgtgtgtggtgtttatgtgtttcagTGACTTTGGATTTGACCCACTTCGGCTTGGTGAAGTCCCAGAGAATCTGGAGAGATATAAGGAATCCGAACTTATCCACTGCAGATGGGCTATGCTCGCT

upper sequence: GLYMA16G26130.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ15021 (Selaginella moellendorffii), 3'ss of exon 1
aaaaaatcactttgttggcatattttagtgattttgaatggtttggtgggttttggtgtgatggtgatttatgcatgcacgttttgctcttatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCT
                           |||| ||| ||   ||    | | | | || |  |  |   |||    ||   |    ||| |    || |||||||||||||||||| || ||  | ||||| ||||| || || || || ||  | ||||| |||||||| ||||| |||||||||||||| ||||| || 
---------------------------gtgagtttaaac--ttccaagagatctagtttc-tcatagcttacaagtgagag---cgctttgtccttccagTGACTTTGGATTCGATCCACTGGGACTTGGAGAAGTTCCCGACAACCTGGAACGATTCAAGGAGTCAGAGCTCATCCACTGCAGATGGGCAATGCTGGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697740|gb|BW655645.1|BW655645
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|20497858|gb|BQ272788.1|BQ272788
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213604459|gb|DB970635.1|DB970635
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|13251847|gb|BG362750.1|BG362750
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213614001|gb|DB960966.1|DB960966
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209708335|gb|BW683925.1|BW683925
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|7795609|gb|AW781006.1|AW781006
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|15288196|gb|BI472087.1|BI472087
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|151401807|gb|EV271620.1|EV271620
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|17153968|gb|BM143901.1|BM143901
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|298191397|gb|HO038876.1|HO038876
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|5606560|gb|AI900658.1|AI900658
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209721878|gb|BW666447.1|BW666447
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|15285015|gb|BI468906.1|BI468906
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213598364|gb|DB970192.1|DB970192
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACC
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACC
EST: gi|209714532|gb|BW662208.1|BW662208
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|22525986|gb|BU084797.1|BU084797
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213590446|gb|DB971902.1|DB971902
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213611977|gb|DB964841.1|DB964841
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209719839|gb|BW674991.1|BW674991
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|5760506|gb|AI965869.1|AI965869
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209726100|gb|BW675274.1|BW675274
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213597323|gb|DB964396.1|DB964396
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|23052790|gb|BU577281.1|BU577281
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|19936938|gb|BQ081074.1|BQ081074
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213615278|gb|DB963472.1|DB963472
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|23064494|gb|BU579267.1|BU579267
EST:     TGGATGCCTGGCCTTTTTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213617262|gb|DB972900.1|DB972900
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|9898757|gb|BE607725.1|BE607725
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|9259114|gb|BE347261.1|BE347261
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|298180129|gb|HO025344.1|HO025344
EST:     TGGATGCCTGACCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|120533558|gb|EH261691.1|EH261691
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213602815|gb|DB970534.1|DB970534
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213610702|gb|DB961177.1|DB961177
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213599093|gb|DB958354.1|DB958354
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|23727156|gb|BU761596.1|BU761596
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|192299119|gb|FG990419.1|FG990419
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213594509|gb|DB970047.1|DB970047
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|15285474|gb|BI469365.1|BI469365
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|20448793|gb|BQ252917.1|BQ252917
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|298178079|gb|HO027462.1|HO027462
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213607305|gb|DB957141.1|DB957141
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209704712|gb|BW656677.1|BW656677
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|5508958|gb|AI855516.1|AI855516
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209710445|gb|BW657317.1|BW657317
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209723892|gb|BW682975.1|BW682975
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209729376|gb|BW663665.1|BW663665
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209711204|gb|BW683819.1|BW683819
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209724483|gb|BW658200.1|BW658200
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213603108|gb|DB960413.1|DB960413
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213594466|gb|DB970032.1|DB970032
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|7283951|gb|AW596552.1|AW596552
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213618332|gb|DB969358.1|DB969358
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|20815213|gb|BQ299691.1|BQ299691
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|10232608|gb|BE801496.1|BE801496
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|13481352|gb|BG510695.1|BG510695
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|213618461|gb|DB969403.1|DB969403
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|20812909|gb|BQ297387.1|BQ297387
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209714721|gb|BW674259.1|BW674259
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|151398535|gb|EV268406.1|EV268406
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|9899761|gb|BE608729.1|BE608729
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|209717227|gb|BW657696.1|BW657696
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|20813328|gb|BQ297806.1|BQ297806
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|31311067|gb|CD396270.1|CD396270
EST:     GGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: GGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
EST: gi|4260020|gb|AI416516.1|AI416516
EST:     TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGG                         TGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA
genomic: TGGATGCCTGGCCAGCCTAGACCCCCCTACCTTGATGGTTCAGCACCTGGgtatgcttca ... tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgggttttggtgtgatggtgatttatgcatgcacgttttgctcttatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCT
                                    ttttgctctt  CT-rich tract
                   tgatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaaaatcactttgttggcatattttagtgattttgaatggtttggtgggttttggtgtgatggtgatttatgcatgcacgttttgctcttatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG