1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacactttactgcttcttcattccgattctaattctataaacttgtccaaatttcgaagcttcctcatttcaattttctttattttgattaatttatggtttcagGGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTTGCGGTGGTGCTTGTTTGCGGTCACATTGCGGTTCAGTTTTTCCCTTCAGCTGTTA
species | Glycine max |
transcript | GLYMA16G26110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGAGATTGGGATCAACGCCGAGTCTATGAGCACGCCAGCGCTTTCAGGG GGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTCGCGGTGEST: gi|17022945|gb|BM093979.1|BM093979
genomic: TTGAGATTGGGATCAACGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaacacttt ... atggtttcagGGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTTGCGGTG
EST: TTGAGATTGGGATCAACGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG GGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTTGCGGTGEST: gi|208034888|gb|GD835960.1|GD835960
genomic: TTGAGATTGGGATCAACGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaacacttt ... atggtttcagGGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTTGCGGTG
EST: TTGAGATTGGGATCAACGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG GGCATGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTTGCGGTGEST: gi|15203857|gb|BI426625.1|BI426625
genomic: TTGAGATTGGGATCAACGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaacacttt ... atggtttcagGGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTTGCGGTG
EST: TTGAGATTGGGATCAACGCCGAGTCTATGAGCACGCCAGCGCTTTCAGGG GGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTCGCGGTG
genomic: TTGAGATTGGGATCAACGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaacacttt ... atggtttcagGGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTTGCGGTG
atttcgaagcttcctcatttcaattttctttattttgattaatttatggtttcagGGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTTGCGGTGGTGCTTGTTTGCGGTCACATTGCGGTTCAGTTTTTCCCTTCAGCTGTTA
gattaat putative branch site (score: 3)
atttcaattttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacactttactgcttcttcattccgattctaattctataaacttgtccaaatttcgaagcttcctcatttcaattttctttattttgattaatttatggtttcagGGCACGGGCCTCTTCTCTGGGTTCACTCGGTTATGCAAGGGCCTTGCGGTGGTGCTTGTTTGCGGTCACATTGCGGTTCAGTTTTTCCCTTCAGCTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT