Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggaaattattgttttggttttggtcttttcctacaatgttttttttttcttttttctttttggtttgtgttcgctagtggcaaatgtactacccttctcctgcaatctgttttttttttttttttttttaatttttcttttgtgttctgcagTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG

Basic information

species Glycine max
transcript GLYMA16G26070.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440293|gb|BE440801.1|BE440801
EST:     TAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACT                         TGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATT
genomic: TAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACTgtaagggaaa ... tgttctgcagTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATT
EST: gi|17022064|gb|BM093098.1|BM093098
EST:     TAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACT                         TGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATT
genomic: TAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACTgtaagggaaa ... tgttctgcagTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATT
EST: gi|151399115|gb|EV268986.1|EV268986
EST:     TAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACT                         TGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATT
genomic: TAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACTgtaagggaaa ... tgttctgcagTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATT
EST: gi|11413292|gb|BF425303.1|BF425303
EST:     TAATTCTGATGGGAATTCACTNTACTCCAATCCTTATGCTTGGAACAACT                         TGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTNTTCATATT
genomic: TAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACTgtaagggaaa ... tgttctgcagTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgcaatctgttttttttttttttttttttaatttttcttttgtgttctgcagTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG
                            ttttaat  putative branch site (score: 3)
            tttttttttttttttt  CT-rich tract
      aatctgtttttttttt  TA-rich tract