Sequence
atgc intronic sequence ATGC exonic sequence...gcattggcaatgtcttggggtttatcctgtctagcctggcttctacgcatatgcttcacttgaggttttcacctttgtctttgtttatgctattccacagCTACTTGGTAACTGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGA
Basic information
species | Glycine max |
transcript | GLYMA16G25850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G25850.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0207g00200.t01 (Vitis vinifera), 3'ss of exon 1
gcattggcaatgtcttggggtttatcctgtctagcctggcttctacgcatatgcttcacttgaggttttcacctttgtctttgtttatgct-attccacagCTACTTGGTAACTGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGA
| | | | ||| || | || ||| || | || | ||| | | |||| ||||| ||| | ||| ||||| ||||||||| || ||||| ||||||||||| ||||| | ||||||| | || |||||||||||||||||| | |||||| | | |||| |
-tgtgaattactttgtaccttttttcgattttattatggaacaggaaaatcttctggatcatttctttcctgcaatgtcattgttcatgttgattttgcagCTTCTTGGTAACAGTTATGGGCTTGGTAATTCCATGGAGTTTGACACTGTCACTGGTGGATGCATACTCTGTCTTTGTTAAATGTCCTCTGCATCAACCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20813174|gb|BQ297652.1|BQ297652EST: CTTCTCTTCATGTGTTTGGATGTTGATTTCTACGGCTACACTGCTTTCTG CTACTTGGTAACTGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTT
genomic: CTTCTCTTCATGTGTTTGGATGTTGATTTCTACGGCTACACTGCTTTCTGgtctctctct ... tattccacagCTACTTGGTAACTGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgcatatgcttcacttgaggttttcacctttgtctttgtttatgctattccacagCTACTTGGTAACTGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGA
ctattcc CT-rich tract
tttgtttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcattggcaatgtcttggggtttatcctgtctagcctggcttctacgcatatgcttcacttgaggttttcacctttgtctttgtttatgctattccacagCTACTTGGTAACTGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGA
- - - -caatgtc
- - - - - - - - ggggttt
- - - - - - - - - - - - -cctgtct
- - - - - - - - - - - - - - - - - - tggcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - gcttcac