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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcactcgtatgagtcggtcactactttaattggatcgttttcttattaattttataatttaattgaatcatttccttgttgttatttttttttatcagATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAAACCGTTTCGTGTGCGAGATATGCAACAAGGGATTCCAGAGGGACCAGAA

Basic information

species Glycine max
transcript GLYMA16G25550.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25550.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G171073_T02 (Zea mays), 3'ss of exon 1
-----------------------------tttcactcgtatgagtcggtcactactttaattggat-cgttttcttattaattttataatttaattga-----atcatttccttgttgttatttttttttatcagATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAAACCGTTTCGTGTGCGAGATATGCAACAAGGGATTCCAGAGGGACCAGAA
                             ||| | |||| |     ||||     | |   ||  | |      |   ||  | | |    | || ||     |      | | |  ||  |  |  |    ||||||| || || |||||||| || || ||||| | | ||||  |||| || ||||| |||||||||||||| ||||||||||| |||||| ||||||||||
gtgattgatatttttttgttttgttttgtttttagtcgtttatagtggtccgaggtgtgtgtgcgtgccggggatagctagctctttgtcgtgatcgatggcgacggcgccgtggccgtggtggtggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGCGGGACCAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533267|gb|EH261400.1|EH261400
EST:     AAGAAAAAACGAAACCTCCCGGGCATGCCAG                         ATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAA
genomic: AAGAAAAAACGAAACCTCCCGGGCATGCCAGgtagctgtaa ... tttttatcagATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAA
EST: gi|120534133|gb|EH262266.1|EH262266
EST:     AAGAAAAAACGAAACCTCCCGGGCATGCCAG                         ATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAA
genomic: AAGAAAAAACGAAACCTCCCGGGCATGCCAGgtagctgtaa ... tttttatcagATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAA
EST: gi|120533468|gb|EH261601.1|EH261601
EST:     AAGAAAAAACGAAA-CTCCCGGGCATGCCAG                         ATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAA
genomic: AAGAAAAAACGAAACCTCCCGGGCATGCCAGgtagctgtaa ... tttttatcagATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattaattttataatttaattgaatcatttccttgttgttatttttttttatcagATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAAACCGTTTCGTGTGCGAGATATGCAACAAGGGATTCCAGAGGGACCAGAA
                           tttccttgttgttatt  CT-rich tract
     attttataatttaatt  TA-rich tract