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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttttctatttcactgcatcgctctctttctccaaatctcgtttcgtgtagtttatcgtatttatcttgcgattgcttcaatttcataaatcattgatgcaagcttgtgaactatgaagttgaatttgagttattatgataataaaaaaaattccattattcatttatttattggcttaattggttccagAAAGAAGCAAGATGATAAAAGCAGTGCTGGTGTTGAACACGGAGGGGAAGCCTCGTCTCGCCAAATTCTACCAATTTCAG

Basic information

species Glycine max
transcript GLYMA16G25400.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308409|gb|FK002809.1|FK002809
EST:     CATCCCATCGGCGATCGAAGACTGAACTGGTGCGGCCAATTCAATTTCAG                         AAAGAAGCAAGATGATAAAAGCAGTGCTGGTGTTGAACACGGAGGGGAAGC
genomic: CATCCCATCGGCGATCGAAGACTGAACTGGTGCGGCCAATTCAATTTCAGgttcgttttc ... ttggttccagAAAGAAGCAAGATGATAAAAGCAGTGCTGGTGTTGAACACGGAGGGGAAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgataataaaaaaaattccattattcatttatttattggcttaattggttccagAAAGAAGCAAGATGATAAAAGCAGTGCTGGTGTTGAACACGGAGGGGAAGCCTCGTCTCGCCAAATTCTACCAATTTCAG
                                       gcttaat  putative branch site (score: 4)
 aataaaaaaaattcca  TA-rich tract