1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttaagatcgaaaactgctgccaaaacaagttaatttgaaagatgaattttgaaataactttgcttacgatatggttttctttgaggaattatttccagGTGATGATCACGAATAGGAAGGAACGAGGTGAATTATTGGAAGCCTTAGTAGTTAGCGACAAAGATATCATCATTCCAAATTTTCCACAG
species | Glycine max |
transcript | GLYMA16G25350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCACAAGAAGCAGTGGTATCCCAATCGTTTGCTCAAAGATTATCTCGAG GTGATGATCACGAATAGGAAGGAACGAGGTGAATTATTGGAAGCCTTAGTAEST: gi|51344400|gb|CO985133.1|CO985133
genomic: CGCACAAGAAGCAGTGGTATCCCAATCGTTTGCTCAAAGATTATCTCGAGgtatacgtat ... ttatttccagGTGATGATCACGAATAGGAAGGAACGAGGTGAATTATTGGAAGCCTTAGTA
EST: CGCACAAGAAGCAGTGGTATCCCAATCGTTTGCTCAAAGATTATCTCGAG GTGATGATCACGAATAGGAAGGAACGAGGTGAATTATTGGAAGCCTTAGTAEST: gi|51343238|gb|CO983971.1|CO983971
genomic: CGCACAAGAAGCAGTGGTATCCCAATCGTTTGCTCAAAGATTATCTCGAGgtatacgtat ... ttatttccagGTGATGATCACGAATAGGAAGGAACGAGGTGAATTATTGGAAGCCTTAGTA
EST: CGCACAAGAAGCAGTGGTATCCCAATCGTTTGCTCAAAGATTATCTCGAG GTGATGATCACGAATAGGAAGGAACGAGGTGAATTATTGGAAGCCTTAGTA
genomic: CGCACAAGAAGCAGTGGTATCCCAATCGTTTGCTCAAAGATTATCTCGAGgtatacgtat ... ttatttccagGTGATGATCACGAATAGGAAGGAACGAGGTGAATTATTGGAAGCCTTAGTA
gaattttgaaataactttgcttacgatatggttttctttgaggaattatttccagGTGATGATCACGAATAGGAAGGAACGAGGTGAATTATTGGAAGCCTTAGTAGTTAGCGACAAAGATATCATCATTCCAAATTTTCCACAG
tgcttac putative branch site (score: 2)
ttatttcc putative PPT
aaataacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaagatcgaaaactgctgccaaaacaagttaatttgaaagatgaattttgaaataactttgcttacgatatggttttctttgaggaattatttccagGTGATGATCACGAATAGGAAGGAACGAGGTGAATTATTGGAAGCCTTAGTAGTTAGCGACAAAGATATCATCATTCCAAATTTTCCACAG
- - - - - - - actgctg
- - - - - - - - - - -ccaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - gaaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac