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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataagatttttgttgatgtttgttattattggtaaaggagttaaattaaaaggaagtgttttattcttagttttaactattttgaatttttttggcgcagTGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTCTCTATTTCGGAG

Basic information

species Glycine max
transcript GLYMA16G25310.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213614733|gb|DB973076.1|DB973076
EST:     TCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACG                         TGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTC
genomic: TCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACGgtaagagaaa ... tttggcgcagTGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTC
EST: gi|11412307|gb|BF424318.1|BF424318
EST:     TCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACG                         TGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTC
genomic: TCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACGgtaagagaaa ... tttggcgcagTGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaaggaagtgttttattcttagttttaactattttgaatttttttggcgcagTGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTCTCTATTTCGGAG
                         ttttaac  putative branch site (score: 2)
                                         ttttttt  putative PPT
           tgttttattcttagtt  TA-rich tract