Sequence
atgc intronic sequence ATGC exonic sequence...aaaaaattatccaaagtatcatacattgctttcttgttcatataacctcatgagttatgtttttcacccattagtttccaattgtttttgcatgttatagTGGCTTGGGGTTCGGAACGGAAGAACCAGTGGCACAAACGAAGTATGAAGAGACCAAGACTAATTAAGTAAGAGAGAACTCCAAGTTCAATGGATTATTA
Basic information
species | Glycine max |
transcript | GLYMA16G25270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6964220|gb|AW432913.1|AW432913EST: GCGCAGAAGTCCGGGTCTTTTGCTTCATGGGCTTATGACAAAATTTCCCG TGGCTTGGGGTTCGGAACGGAAGAACCAGTGG
genomic: GCGCAGAAGTCCGGGTCTTTTGCTTCATGGGCTTATGACAAAATTTCCCGgtaatctctc ... catgttatagTGGCTTGGGGTTCGGAACGGAAGAACCAGTGG
EST:
gi|6914495|gb|AW396025.1|AW396025EST: GCGCAGAAGTCCGGGTCTTTTGCTTCATGGGCTTATGACAAAATTTCCCG TGGCTTGGGGTTCGGAACGGAAGAACCAGTGGCACAAACGAAGTATGAAGA
genomic: GCGCAGAAGTCCGGGTCTTTTGCTTCATGGGCTTATGACAAAATTTCCCGgtaatctctc ... catgttatagTGGCTTGGGGTTCGGAACGGAAGAACCAGTGGCACAAACGAAGTATGAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctcatgagttatgtttttcacccattagtttccaattgtttttgcatgttatagTGGCTTGGGGTTCGGAACGGAAGAACCAGTGGCACAAACGAAGTATGAAGAGACCAAGACTAATTAAGTAAGAGAGAACTCCAAGTTCAATGGATTATTA
tttttgc CT-rich tract
ttatgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaaattatccaaagtatcatacattgctttcttgttcatataacctcatgagttatgtttttcacccattagtttccaattgtttttgcatgttatagTGGCTTGGGGTTCGGAACGGAAGAACCAGTGGCACAAACGAAGTATGAAGAGACCAAGACTAATTAAGTAAGAGAGAACTCCAAGTTCAATGGATTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
aaaaaat
- - - - atccaaa
- - - - - - - - - -catacat
- - - - - - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - - - - - - - -tcatgag