1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cattagatgagaagtgtgactggcatttttcttgttgattttatttcttaatacgaatgcttagagttggtttctgctttaacattttcttgaaacgcagGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAAC
species | Glycine max |
transcript | GLYMA16G24870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCG GGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAEST: gi|213596428|gb|DB960273.1|DB960273
genomic: TTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGgttcgtgttt ... tgaaacgcagGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGA
EST: TTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCG GGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAEST: gi|298174899|gb|HO014816.1|HO014816
genomic: TTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGgttcgtgttt ... tgaaacgcagGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGA
EST: TTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCG GGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAEST: gi|213605929|gb|DB968653.1|DB968653
genomic: TTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGgttcgtgttt ... tgaaacgcagGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGA
EST: TTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCG GGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGA
genomic: TTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGgttcgtgttt ... tgaaacgcagGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGA
tcttaatacgaatgcttagagttggtttctgctttaacattttcttgaaacgcagGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAAC
ctttaac putative branch site (score: 3)
cattttctt CT-rich tract
tttaacattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattagatgagaagtgtgactggcatttttcttgttgattttatttcttaatacgaatgcttagagttggtttctgctttaacattttcttgaaacgcagGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAAC
- - - - - - - -gtgactg
- - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgct