Sequence
atgc intronic sequence ATGC exonic sequence...aaagcacctaatcaactacatctaagatttgctcttgcctaattttgttttactaatgtgagtgatgatgtggtctgtgtttgtggggttgggtgtgcagGAACCTGGTAGAGCAGAGAGGGCTTTTGCTAGATATGATTATTTGACAGTGATGAAGAAGTTTTTGCTGATAACACGGACAGATTTTCTAGCATCTCCAC
Basic information
species | Glycine max |
transcript | GLYMA16G24570.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G24570.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g02610.t01 (Vitis vinifera), 3'ss of exon 2
aaagcacctaatcaactacatctaagatttgctcttgcctaattttgttttactaatgtgagtgatgatgtggtctgtgtttgtggggttgg---gtgtgcagGAACCTGGTAGAGCAGAGAGGGCTTTTGCTAGATATGATTATTTGACAGTGATGAAGAAGTTTTTGCTGATAACACGGACAGATTTTCTAGCATCTCCAC
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--------------------------gtttcctttctgtccctctccatacactcttgtga-tgcatatgcagtacacttatatgggattgttctgtcgatagGAACCGGGAAGAGCAGAGAGGGCATTTGCAAGATATGATTATCTGGCAGTGATGAAGAAGTTCCTCCTGATCAACAAGACAGATCTACTAATAGCTCCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15200553|gb|BI424408.1|BI424408EST: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAG GAACCTGGTAGAGCAGAGAGGGCTTTTGCTAGATATGATTATTTGACAGTG
genomic: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAGgtaacacaat ... gggtgtgcagGAACCTGGTAGAGCAGAGAGGGCTTTTGCTAGATATGATTATTTGACAGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttttactaatgtgagtgatgatgtggtctgtgtttgtggggttgggtgtgcagGAACCTGGTAGAGCAGAGAGGGCTTTTGCTAGATATGATTATTTGACAGTGATGAAGAAGTTTTTGCTGATAACACGGACAGATTTTCTAGCATCTCCAC
tactaat putative branch site (score: 1)
tactaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaagcacctaatcaactacatctaagatttgctcttgcctaattttgttttactaatgtgagtgatgatgtggtctgtgtttgtggggttgggtgtgcagGAACCTGGTAGAGCAGAGAGGGCTTTTGCTAGATATGATTATTTGACAGTGATGAAGAAGTTTTTGCTGATAACACGGACAGATTTTCTAGCATCTCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT