1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctatattttgttgtattttttttttgtttgagtatgattgtgctttctttcttttttattttttttctttctttttctttaaccacattgaataatatagGCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGTCTGTTTAGGCCTGAAAGAGTCAAAGGATTTGTTTGTCTGGGTTTTCCTT
species | Glycine max |
transcript | GLYMA16G24570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAG GCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGTEST: gi|254336912|gb|GR843091.1|GR843091
genomic: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAGgtaacacaat ... aataatatagGCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGT
EST: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAG GCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGTEST: gi|151393066|gb|EV262941.1|EV262941
genomic: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAGgtaacacaat ... aataatatagGCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGT
EST: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAG GCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGTEST: gi|192333316|gb|FK024293.1|FK024293
genomic: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAGgtaacacaat ... aataatatagGCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGT
EST: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAG GCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGTEST: gi|51341471|gb|CO982788.1|CO982788
genomic: ACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAGgtaacacaat ... aataatatagGCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGT
EST: ATCATTTTGGTCAACATCAG GCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGT
genomic: ATCATTTTGGTCAACATCAGgtaacacaat ... aataatatagGCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGT
tctttcttttttattttttttctttctttttctttaaccacattgaataatatagGCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGTCTGTTTAGGCCTGAAAGAGTCAAAGGATTTGTTTGTCTGGGTTTTCCTT
ctttaac putative branch site (score: 3)
ttttttattttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatattttgttgtattttttttttgtttgagtatgattgtgctttctttcttttttattttttttctttctttttctttaaccacattgaataatatagGCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGTCTGTTTAGGCCTGAAAGAGTCAAAGGATTTGTTTGTCTGGGTTTTCCTT
- - - - tgttgta
- - - - - - - - - - - -ttgtttg