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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctctgcttttttcgtttacgcgtgtatggtttttgctttcttttctctccttcgtgttggtttttcattgttgagagcagtttgtcgctttggtgtagGTGGAAGTGTTATGGGTCGATGATTGTTGGGTTATTGTCGTCGTCAATACACCAG

Basic information

species Glycine max
transcript GLYMA16G24560.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326491|gb|AW620300.1|AW620300
EST:     CAAGACGATCCCAGCCCCAAAGCTTCTTCATAGTCTTCATCATCGCATGG                         GTGGAAGTGTTATGGGTCGATGATTG
genomic: CAAGACGATCCCAGCCCCAAAGCTTCTTCATAGTCTTCATCATCGCATGGgttagcatta ... tttggtgtagGTGGAAGTGTTATGGGTCGATGATTG
EST: gi|254316013|gb|GR825822.1|GR825822
EST:     CCAAAGCTTCTTCATAGTCTTCATCATCGCATGG                         GTGGAAGTGTTATGGGTCGATGATTGTTGGGTTATTGTCGTCGTCAATACA
genomic: CCAAAGCTTCTTCATAGTCTTCATCATCGCATGGgttagcatta ... tttggtgtagGTGGAAGTGTTATGGGTCGATGATTGTTGGGTTATTGTCGTCGTCAATACA
EST: gi|298167116|gb|HO010555.1|HO010555
EST:     CAAGACGATCCCAGCCCCAAAGCTTCTTCATAGTCTTCATCATCGCATGG                         GTGAAAGTGTTATGAGTCGATGATTGTTGGGTTATT
genomic: CAAGACGATCCCAGCCCCAAAGCTTCTTCATAGTCTTCATCATCGCATGGgttagcatta ... tttggtgtagGTGGAAGTGTTATGGGTCGATGATTGTTGGGTTATT
EST: gi|254318251|gb|GR832419.1|GR832419
EST:     CAAGACGATCCCAGCCCCAAAGCTTCTTCATAGTCTTCATCATCGCATGG                         GTGGAAGTGTTATGGGTCGATGATTGTTGGGTTATTGTCGTCGTCAATACA
genomic: CAAGACGATCCCAGCCCCAAAGCTTCTTCATAGTCTTCATCATCGCATGGgttagcatta ... tttggtgtagGTGGAAGTGTTATGGGTCGATGATTGTTGGGTTATTGTCGTCGTCAATACA
EST: gi|21889380|gb|BQ742593.1|BQ742593
EST:     CAAGACGATCCCAGCCCCAAAGCTTCTTCATAGTCTTCATCATCGCATGG                         GTGGAAGTGTTATGGGTCGATGATTGTTGGGTTATTGTCGTCGTCAATACA
genomic: CAAGACGATCCCAGCCCCAAAGCTTCTTCATAGTCTTCATCATCGCATGGgttagcatta ... tttggtgtagGTGGAAGTGTTATGGGTCGATGATTGTTGGGTTATTGTCGTCGTCAATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctccttcgtgttggtttttcattgttgagagcagtttgtcgctttggtgtagGTGGAAGTGTTATGGGTCGATGATTGTTGGGTTATTGTCGTCGTCAATACACCAG
                                         tcgcttt  CT-rich tract
                 tttttcatt  TA-rich tract