1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggggaaaaaataaactagctaggattgtatcgtgtatttacaacataattttatcgaattctgatgctgttggttgtgtgtatttggttgtgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGATTCCCGATGGACCAATTTTTTTGGTAATAGGTGGTGAAGGTATATTGA
species | Glycine max |
transcript | GLYMA16G24290.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAAACGTTACTATGAGTEST: gi|298173654|gb|HO016990.1|HO016990
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAA-CGTTACTATGAGT
EST: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGEST: gi|193332838|gb|FK299156.1|FK299156
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGG
EST: ACACTCCGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAAACGTTAACTATGAGTTTCTAEST: gi|19053252|gb|BM731919.1|BM731919
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAA-CGTTA-CTATGAGTTTCTA
EST: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGEST: gi|17153445|gb|BM143378.1|BM143378
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGG
EST: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGEST: gi|193356777|gb|FK320099.1|FK320099
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGG
EST: ACACTCCGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAEST: gi|192295160|gb|FG986879.1|FG986879
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTA
EST: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGEST: gi|19348837|gb|BM893369.1|BM893369
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGG
EST: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGEST: gi|193401253|gb|FK370168.1|FK370168
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGG
EST: ACACTCCGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAACGTTAACTATGAGTTTCTAEST: gi|254323220|gb|GR840025.1|GR840025
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAACGTTA-CTATGAGTTTCTA
EST: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGEST: gi|193587923|gb|FK543504.1|FK543504
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGG
EST: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTAT GATCACCGACAATTCCGGCAACGTTACTATGAGTT
genomic: ACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATgtatctcctt ... tgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTT
taattttatcgaattctgatgctgttggttgtgtgtatttggttgtgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGATTCCCGATGGACCAATTTTTTTGGTAATAGGTGGTGAAGGTATATTGA
ttctgat putative branch site (score: 3)
tgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggaaaaaataaactagctaggattgtatcgtgtatttacaacataattttatcgaattctgatgctgttggttgtgtgtatttggttgtgccctgcagGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGATTCCCGATGGACCAATTTTTTTGGTAATAGGTGGTGAAGGTATATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtg