Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

Basic information

species Glycine max
transcript GLYMA16G24220.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 3'ss of exon 1
--------gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
          | |  | |  |      ||| ||||      |||   ||  |  ||   ||    ||  |    |||| ||        | || ||     | || |||| ||||| ||||||||||| || ||||||||||||||||| || ||||| |||||||||||| | |||||||| |||||||| || |||||||| || ||
ccgattggagatcggatttgtggggaaaaaaagttgggagctttggatt--ctgttcttgatggggggatttgcttatttgc-------tttcattcgatctgttgcagGCATGGGTGCGGCGTACGGGACGGCGAAGAGCGGCGTCGGCGTGGCGTCCATGGGCGTGATGCGCCCGGAGCTCGTGATGAAGTCCATCGTGCCCGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g73130.1 (Oryza sativa), 3'ss of exon 1
-------------gtaactaactc-atcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
             ||||  | ||| ||||||  |  ||  |     ||| |   |||| | || ||||       | | |  ||  ||||       | | || |  |||| |||| ||||| ||||||||||| || ||   ||||||||||||||| |||   ||||| |||||| ||||||||||||||||||| |||||||||||||| ||
agaaaaaaagatcgtaaaaagctcgatcaaacgatcgatctgcaagtttctgcattacgaattacgaa-------ttgatggat--gaaat------ttggttataattttgcagGCATGGGGGCGGCGTACGGGACGGCTCGGAGCGGCGTCGGGGTGGCGCACATGGGGGTGATGCGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgt-gtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
                       || |     | ||    ||    ||  ||   || |     | | |||||| |    || | |          |   ||| ||||| || || ||||| ||||| ||||||||||| || || ||||| ||||| |||||| | ||||| ||||||||||| || ||||| || || ||
--------------------gtaagctcccaatcttccccttcactttctcggggccag----atctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 1
gtaactaactc-atcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
  |  |    | |||   |    || ||      |                  | || |||   ||  |  ||       | | | | ||       | |||| ||||| || |||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||| || ||||| || |||||||| || ||
-gatttggtccgatcgggtgtgggatttcagaaatcgacagccttttcccgtcagacaggcag-gtcctgactacgctgttcttttgcttgatccgatgcagGCATGGGCGCAGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
gtaactaactcatcaaatcaaagagtttttttttttt----tttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
        |  |||   |   ||  | |    ||           |    |||      | |||    |  |  ||       | | | | ||         |||| ||||| || |||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||| || ||||| || |||||||| || ||
----tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagt-tgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
gtaactaactc--atcaaatcaaag-agtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
  |   || |    |   ||| | |  | |      | |        |||||  |     |   |    | ||||    | |||| | || | ||  |   |||| ||||| ||||||||||| || || ||||| |||||||| || ||||| ||||| || ||| | || ||||| || ||||| || |||||||| || ||
-gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtga-atgacatgatctccctctgtgtat-gtgtgtggctcg-cagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G19910.1 (Arabidopsis thaliana), 3'ss of exon 1
---gtaactaactcatcaaatcaaagagtttttt-tttttttttttacaatttccgaaaccggcgtcgtttt-atctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
     | || | |  || | ||      | | || | | ||||||| | |     ||    |       | | ||||||  |  |  |      || | ||| ||||||||||||| |||||||| || ||||||||||| || || || ||||||||||| |||||||| || ||||| |||||||||||||| || || |||||
gtaccatctgatttctccattcccccgatctcttatctctttttttcccagaattgattttgatccaaatctgatctgatccgattcgatcggattatgttt-cagGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCTGTTGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 3'ss of exon 1
gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
            | | ||   |||    | | || |   ||| |       ||| |   |   |||||   |   |        || |||  | ||||||||||||||||| |||||||| || |||||||| || || || |||||||||||||| |||||||| || || || || ||||||||||| || || |||||
-----------gtaagatttcagatccctctcttgtcaatttccccgaattgaatcacccaatgtttttgattcgattcgaatccgatttgatgttttcagGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGAGTTGGAGTTGCGTCGATGGGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTTCCTGTTGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttat-ctgaaaccgtgtgtcgtttttgtttttt----cagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
      ||    | |  |  | |   | | || || ||||  |  | ||     | |    ||| | | | | || |   |    ||     ||||||     |||| ||||| || || || ||||| || ||||| || || || || || || ||||| |||||| |||| |||||||||||||| ||||||||||| || ||
------aagcagtgacgttgagggcctatcttgttgttttgaaggactttgatcagcttgctcgctctttaccgatatgttaacccgaggaggtttttgagcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaactaactcatcaaatcaaagagtttttttttttttttttacaattt----ccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
 ||||       |          | |||    |   |  | ||  || |     |||||    | | | | |   | |||  |||    |||||||      |||| ||||| || || || ||||| || ||||| || || || || || || ||||| |||||| |||| |||||||||||||| |||||||| || || ||
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaatt--cctagatatgaataaaatggtgaag-gtttttgcgcg--cagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
---gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgttt-ttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
   || |        |          || ||   |||  |    ||   |   |||   ||       |  |  |||| |    ||| |  | || ||   ||||| ||||| || || || || || || ||||| || || || || || || ||||| |||||| |||| |||||||||||||| ||||||||||| || ||
cccgtgaacggt--gttgggcacttaagcttcaatttcctcagctagggtg--cgacttcgaaactcctggacatgaa-ctaaatgttgaatgttattgcgtcagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgtttttt-cagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
                                       |   | |  | |     |  | | | | ||   | ||   || |  |  |   |   || |||| |||||||| || || || || || ||||||||||| || || ||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| ||
--------------------------------------gtaagccagattctttttcctctttgatctaatcgcaa---tgcgatggatcaatcgattacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
-----------------------------------------------------------------------------------gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
                                                                                   |    |    |||  | ||       |      |||  ||     | | |||| |      ||     ||     |   | |   |   || | ||| |||| |||||||| || || |||||||| ||||| || || || || || || |||||||||||| |||||||||| |||||||||||||||||||| || ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
-----------------------------------------------------------------------------------gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
                                                                                   |    |    |||  | ||       |      |||  ||     | | |||| |      ||     ||     |   | |   |   || | ||| |||| |||||||| || || |||||||| ||||| || || || || ||||| |||||||||||| |||||||||| |||||||||||||||||||| || ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213620504|gb|DB957348.1|DB957348
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|4396139|gb|AI495136.1|AI495136
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|4293464|gb|AI437909.1|AI437909
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|207839834|gb|GD810923.1|GD810923
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|21677610|gb|BQ629961.1|BQ629961
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|213616647|gb|DB969171.1|DB969171
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|209719560|gb|BW651012.1|BW651012
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|10844231|gb|BF067545.1|BF067545
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|58016922|gb|CX703664.1|CX703664
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|58017335|gb|CX704077.1|CX704077
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|10235471|gb|BE804359.1|BE804359
EST:     CGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|213607931|gb|DB959186.1|DB959186
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|18735424|gb|BM528757.1|BM528757
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|9901554|gb|BE610522.1|BE610522
EST:     ACCCTTTCTTTGGTCTTCCTCGGAGCCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: A-CCTTTCTTTGG-CTTCCTCGGAG-CCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|213610661|gb|DB961136.1|DB961136
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCGCGAAGAGTGGCGTCGGGGTTGCGTCGA
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
EST: gi|10847454|gb|BF071547.1|BF071547
EST:     CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGAGCGGCGTACGGAACCCGCGAAGAGCCGGCGTCGGGGTTGCGTC
genomic: CGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGAGCGGCGTACGGAA-CCGCGAAGAG-CGGCGTCGGGGTTGCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
                                     tcgtttttgttttttc  CT-rich tract
                                        tttttgttttttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT