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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataataggcgactatgatctgtatagACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAG

Basic information

species Glycine max
transcript GLYMA16G23590.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23590.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataataggcgactatgatctgtatagACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAG
| || || || | || || | | | | | | | |||| || | | | | ||| || |||||||| ||||||||||||||||||||||| ||||| || ||| |||| || || || || || || || || |||| ||| ||||| ||||
------------------------------------------------------------------------------gtacga-catgcgccctgctgccgtttctcgctccgagaactccgatccctaactaatctcccat-cgtgttggttttcctttgca---gGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG--------------

upper sequence: GLYMA16G23590.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 1
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgtgtgtgtgtgtgtgtgtgtataataggcgactatgatctgtatagACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAG
| || | | | | || ||| |||| || | | || || | ||| || | | | || | | | | | | || | | | ||||||||||||||||||| |||||||| ||||||||||| || || ||||| ||||| || ||||||| || ||||| ||||||| ||||| || || |
----------------------------------------------gtatgcctatcctatttacttccacttttgccattctatttcctaat-atttatactctttttcttctttcacaaattagggttttctcaccgattattttaatttgcatcattctgattcagGCGACTATGATCTGTATCGACAATTCCGAATGGATGCGAAATGGCGATTATTCTCCCACTAGATTTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTG--------------

upper sequence: GLYMA16G23590.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ17485 (Selaginella moellendorffii), 3'ss of exon 1
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataataggcgactatgatctgtatagACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTC---TCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAG
|| | | | | | | | | | | | | ||||||| |||||||| ||||||||||| || |||||||| || ||||| |||| ||| | | |||| || ||||||| || || | |||||| || |
---------------------------------------------------------------------------------------------------------------------gtaagctcct-cgcgatctttcacgc-caggcctatcttctcttgtgccagGCGACGATGATCTGCATAGACAATTCCGAGTGGATGCGAAATGGGGACTACTATCCGACGAGTAGATTCCAGTCCCAAGCTGATGCTGTCAATCTTATCT-----------------

upper sequence: GLYMA16G23590.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ28815 (Selaginella moellendorffii), 3'ss of exon 1
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataataggcgactatgatctgtatagACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTC---TCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAG
|| | | | | | | | | | | | | ||||||| |||||||| ||||||||||| || |||||||| || ||||| |||| ||| | | |||| || ||||||| || || | |||||| || |
---------------------------------------------------------------------------------------------------------------------gtaagctcct-cgcgatctttcacgc-caggcctatcttctcttgtgccagGCGACGATGATCTGCATAGACAATTCCGAGTGGATGCGAAATGGGGACTACTATCCGACGAGTAGATTCCAGTCCCAAGCCGATGCTGTCAATCTTATCT-----------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtataataggcgactatgatctgtatagACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAG
                          tgtataata  TA-rich tract