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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataatagGCGACTATGATCTGTATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCG

Basic information

species Glycine max
transcript GLYMA16G23590.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataatagGCGACTATGATCTGTATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCG
                                                                               |  || ||  ||     |     || ||   |  | |        |   |   |         |  ||||  || |   | |  |   ||| || |||||||| ||||||||||||||||||||||| ||||| || ||| |||| || || || || || || || || |||| ||| ||||| ||||
------------------------------------------------------------------------------gtacga-catgcgccctgctgccgtttctcgctccgagaactccgatccctaactaatctcccat-cgtgttggttttcctttgca---gGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG

upper sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 1
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgtgtgtgtgtgtgtgtgtgtataatagGCGACTATGATCTGTATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCG
                                               |     ||  | | | | ||    |||   ||||  ||  |    | ||   || |   ||| ||  |       |  | || |       |  | | |   | ||  |   | |     ||||||||||||||||||| |||||||| ||||||||||| || || ||||| |||||  || ||||||| || ||||| |||||||  ||||| || || |
----------------------------------------------gtatgcctatcctatttacttccacttttgccattctatttcctaat-atttatactctttttcttctttcacaaattagggttttctcaccgattattttaatttgcatcattctgattcagGCGACTATGATCTGTATCGACAATTCCGAATGGATGCGAAATGGCGATTATTCTCCCACTAGATTTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTG

upper sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ17485 (Selaginella moellendorffii), 3'ss of exon 1
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataatagGCGACTATGATCTGTATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTC---TCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCG
                                                                                                                     ||  |  |    | |    |    |   | |  | | |     | |   ||||||| |||||||| ||||||||||| || |||||||| || ||||| |||| |||  |   | |||| ||  ||||||| || || | |||||| || |   
---------------------------------------------------------------------------------------------------------------------gtaagc-tcctcgcgatctttcacgccag-gcctatcttctcttgtgccagGCGACGATGATCTGCATAGACAATTCCGAGTGGATGCGAAATGGGGACTACTATCCGACGAGTAGATTCCAGTCCCAAGCTGATGCTGTCAATCTTATCT---

upper sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ28815 (Selaginella moellendorffii), 3'ss of exon 1
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataatagGCGACTATGATCTGTATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTC---TCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCG
                                                                                                                     ||  |  |    | |    |    |   | |  | | |     | |   ||||||| |||||||| ||||||||||| || |||||||| || ||||| |||| |||  |   | |||| ||  ||||||| || || | |||||| || |   
---------------------------------------------------------------------------------------------------------------------gtaagc-tcctcgcgatctttcacgccag-gcctatcttctcttgtgccagGCGACGATGATCTGCATAGACAATTCCGAGTGGATGCGAAATGGGGACTACTATCCGACGAGTAGATTCCAGTCCCAAGCCGATGCTGTCAATCTTATCT---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324921|gb|FK015387.1|FK015387
EST:     CTGTTCGCATTCAATCTTTCGCTTCTGAATCTCCAACAATGGTGCTCGAG                         GCGACTATGATCTGTATAGACAATTCGGAATGGATGCGTAACGGGGATTAC
genomic: CTGTTCGCATTCAATCTTTCGCTTCTGAATCTCCAACAATGGTGCTCGAGgtaaatccct ... tgtataatagGCGACTATGATCTGTATAGACAATTCGGAATGGATGCGTAACGGGGATTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataatagGCGACTATGATCTGTATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCG
                                             tgtataata  TA-rich tract