Sequence
atgc intronic sequence ATGC exonic sequencegtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcagTTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTTA
Basic information
species | Glycine max |
transcript | GLYMA16G23380.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G23380.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G51280.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggtt-ttgtgt----gttcagTTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTTA
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------------------------------------------------------gtgattt----gattatatcccttctatagatctgaatttgtgtttgatttgatttttgttctgtctctgattgttgttttatggatcagTTAGTGGAGAAGGATCCAGAGAGAGCAATTCCTCTGTTTTGGAAGGCTATTAATGCTGGAGATAGAGTGGACAGTGCTTTGAAAGACATGGCTATTGTGA
upper sequence: GLYMA16G23380.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g03740.t01 (Vitis vinifera), 3'ss of exon 1
gtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcagTTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTTA
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----------------gtaagcttccgttctgggtaatcttgaaatttgc--caacaaac--cgaggtttcttcttttgcgtgattgatctctgtttgatgggtttgat----------tatgacttttgttgcatcagTTGGTTGACAAGGACCCGGAAAAGGCAATCCCGCTATTTTGGGCCGCCATTAATGCTGGAGATCGAGTGGATAGTGCGCTCAAGGACATGGCCATTGTGA
upper sequence: GLYMA16G23380.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g03720.t01 (Vitis vinifera), 3'ss of exon 1
gtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcagTTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTTA
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----------------gtaagcttccgttctgggaaatcttgaaatttgc--caacaaac--cgaggtttcttcttttgcgtgattgatctctgtttgatgggttggat----------tatgacttttgttgcatcagTTGGTTGACAAGGACCCGGAAAAGGCAATTCCGCTATTTTGGTCCGCCATTAATGCTGGAGATCGAGTGGATAGTGCGCTCAAGGACATGGCCATTGTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4303289|gb|AI443455.1|AI443455EST: ACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAG TTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATT
genomic: ACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAGgtaaattcat ... gtgtgttcagTTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcagTTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTTA
aatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcagTTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA