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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagttctatatttaatgctccatccttcatggtatagaatcttatattttatttgagacaacttcttgaagtcctcaatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG

Basic information

species Glycine max
transcript GLYMA16G19340.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19340.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g28200.1 (Oryza sativa), 3'ss of exon 4
---------aaagt-tctatattta-atgctccatccttcatggtatagaatcttatattttatttgagacaacttcttgaagtcctcaatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG
| ||| || || ||| | | | || |||| || || | || |||| ||| | | ||| ||| | | |||| | | ||||||||||| || |||| |||| |||||||| ||||| ||||| |||||||| ||||| || |||| || |||||||| ||||||
tcattgctgacagtacctgtacttatgaacagtgttcctcctggtgtacaaccataaattt-att------atttgcttatagt--ttattctaacct--cttgtattcagGAAATTTCCACTGGACAGTTGAAGATGTTGCAAAATCTATTGTCTGCATGATAATGTCTGGTCCATGTCTTACAGGATACACACAG

upper sequence: GLYMA16G19340.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G162672_T01 (Zea mays), 3'ss of exon 4
--aaagttctatatttaatgctccatccttcatggtatagaatcttatattttatttgagacaacttcttgaagtcctcaatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG
| ||| | | | | | | ||| || | ||| | | | | | || | || | | || | ||||||||||| || |||| |||| ||||| || ||||| ||||| |||||||| ||||| || |||| ||| |||||||| ||||||
acagagtacagtgtccagctgtt-gtgcttatgaacattgctccttggcatatggctagtatgtatgatt-atgttgttttcccctcatctgtctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGATAATGTCTGGTCCATGCCTTACAGGATACACACAG

upper sequence: GLYMA16G19340.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0105g00590.t01 (Vitis vinifera), 3'ss of exon 4
aaagttctatatttaatgctccatccttcatggtatagaatcttatattttatttgagacaactt---cttgaagtcctc---aatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG
|| || ||| ||| | || | | ||| | | || ||| ||| || | || | | | || || | || ||| || || || |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||| || || || |||||||||
------gcttaattgatggtccctggcaaatttttgccggaacaaggtttcttctaagctctcttgcccttaaattgcttctgaccagattttgctcacatgttagGGAACTTCCACTGGAATTTGGAGGATGTTGCCAAATCAATTGTTTGCATGATTATGTCTGGCCCATGTCTCACTGGCTATACACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttatttgagacaacttcttgaagtcctcaatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG
                                            tctcc  CT-rich tract
 tatttga  TA-rich tract