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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagttctatatttaatgctccatccttcatggtatagaatcttatattttatttgagacaacttcttgaagtcctcaatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG

Basic information

species Glycine max
transcript GLYMA16G19340.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19340.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g28200.1 (Oryza sativa), 3'ss of exon 4
---------aaagt-tctatattta-atgctccatccttcatggtatagaatcttatattttatttgagacaacttcttgaagtcctcaatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG
         | |||  || || |||    |    | | || |||| || || | || |||| |||      |  | |||  |||  | | ||||   |    |    ||||||||||| || ||||   |||| |||||||| ||||| ||||| |||||||| ||||| || ||||  || |||||||| ||||||
tcattgctgacagtacctgtacttatgaacagtgttcctcctggtgtacaaccataaattt-att------atttgcttatagt--ttattctaacct--cttgtattcagGAAATTTCCACTGGACAGTTGAAGATGTTGCAAAATCTATTGTCTGCATGATAATGTCTGGTCCATGTCTTACAGGATACACACAG

upper sequence: GLYMA16G19340.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G162672_T01 (Zea mays), 3'ss of exon 4
--aaagttctatatttaatgctccatccttcatggtatagaatcttatattttatttgagacaacttcttgaagtcctcaatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG
  | ||| |  | |  |    |   | |||      || |   |||    | |   |   |    |  || | ||  |    |    ||      |  ||||||||||| || ||||   |||| ||||| || ||||| ||||| |||||||| ||||| || |||| ||| |||||||| ||||||
acagagtacagtgtccagctgtt-gtgcttatgaacattgctccttggcatatggctagtatgtatgatt-atgttgttttcccctcatctgtctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGATAATGTCTGGTCCATGCCTTACAGGATACACACAG

upper sequence: GLYMA16G19340.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0105g00590.t01 (Vitis vinifera), 3'ss of exon 4
aaagttctatatttaatgctccatccttcatggtatagaatcttatattttatttgagacaactt---cttgaagtcctc---aatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG
         || || ||| ||| |     ||  |          |  |||  | | ||    |||   ||| || | ||    |    | | || || |  || ||| || || || |||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||  || || || |||||||||
------gcttaattgatggtccctggcaaatttttgccggaacaaggtttcttctaagctctcttgcccttaaattgcttctgaccagattttgctcacatgttagGGAACTTCCACTGGAATTTGGAGGATGTTGCCAAATCAATTGTTTGCATGATTATGTCTGGCCCATGTCTCACTGGCTATACACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttatttgagacaacttcttgaagtcctcaatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG
                                            tctcc  CT-rich tract
     tatttga  TA-rich tract